Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0556
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 149 TVTTYHQVGRMLICLKRQ*KKNSQRISLNIVKKHINASC 33
           T+T+YH++      ++    KN    SL + K   N  C
Sbjct: 73  TITSYHRINLKCSLVEFSENKNCNAGSLTVKKNFANKYC 111


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 125 PPDGKWSPSLIDVSNARG 178
           PPD  W P ++  +NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 55  LTIFSEILWLFFFYC 99
           L++  ++LW  FFYC
Sbjct: 301 LSLHGQLLWREFFYC 315


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 643 LPALFYQQMPDAFYFHCFSVLFLAMLDH 560
           LP + Y +  DAF   C   +F+A++++
Sbjct: 298 LPPVSYLKAVDAFMSVCTVFVFMALMEY 325


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 528 RHKVCHSLANISWYHKKTYYPFLQSPV*CT 439
           R+K   S  N +W HK+T+  +      CT
Sbjct: 178 RYKEEESNENYNWEHKETHIDWQPEDEECT 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,956
Number of Sequences: 438
Number of extensions: 3188
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)