Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0556
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03760.1 68416.m00382 LOB domain protein 20 / lateral organ b...    29   3.8  
At2g38100.1 68415.m04677 proton-dependent oligopeptide transport...    28   5.0  
At3g59330.1 68416.m06615 anthocyanin-related membrane protein fa...    28   6.7  
At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ b...    27   8.8  

>At3g03760.1 68416.m00382 LOB domain protein 20 / lateral organ
           boundaries domain protein 20 (LBD20) identical to
           SP|Q9SRV3 LOB domain protein 20 {Arabidopsis thaliana}
          Length = 273

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 172 QGQSQAAAYHKVLSASLV*RTCHHIIKNSK 261
           QG ++ AA HKV  AS V +  HHI  N +
Sbjct: 76  QGAARFAAVHKVFGASNVSKLLHHIPVNRR 105


>At2g38100.1 68415.m04677 proton-dependent oligopeptide transport
           (POT) family protein low similarity to SP|P46032 Peptide
           transporter PTR2-B (Histidine transporting protein)
           {Arabidopsis thaliana}; contains Pfam profile PF00854:
           POT family
          Length = 521

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 608 ILFSLFFCSISCHVRSRPLHMI 543
           I+ S+F CSI+ HV SR L ++
Sbjct: 363 IILSIFCCSIAAHVESRRLKVV 384


>At3g59330.1 68416.m06615 anthocyanin-related membrane protein
           family similar to anthocyanin-related membrane protein 1
           (GI:16416383),  anthocyanin-related membrane protein 2
           (GI:16416385), anthocyanin-related membrane protein 3
           (GI:16416387) [Arabidopsis thaliana]
          Length = 241

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 7   IQSSFYCP*QDALMCFLTIFSEILWLFFFYCLF 105
           ++++F     + ++C+LTI+ EIL + F+ C F
Sbjct: 102 VEANFLAEAAEKVICYLTIYDEIL-IRFYSCAF 133


>At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ
           boundaries domain protein 30 (LBD30) identical to LOB
           DOMAIN 30 [Arabidopsis thaliana] GI:16660632; supported
           by full-length cDNA gi:16660631
          Length = 228

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 172 QGQSQAAAYHKVLSASLV*RTCHHIIKNSK 261
           QG +  AA HKV  AS V +  HH+ ++ +
Sbjct: 42  QGAAHFAAVHKVFGASNVSKLLHHVPEHKR 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,043
Number of Sequences: 28952
Number of extensions: 233924
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)