Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0555
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    28   0.066
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    28   0.066
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   5.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.6  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 543 PETPPSAEYIQEIFCTVCGDPSS 475
           P++P S+  I +I C VCGD SS
Sbjct: 24  PQSPSSSSRILDIPCKVCGDFSS 46


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 543 PETPPSAEYIQEIFCTVCGDPSS 475
           P++P S+  I +I C VCGD SS
Sbjct: 24  PQSPSSSSRILDIPCKVCGDFSS 46


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 478 LPHVHQTRRSTTSPRVY 428
           LP     +RST SPRVY
Sbjct: 409 LPSPGSDQRSTPSPRVY 425


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 449 YDQSESVPFRVEXARD 402
           YD  ESV  +V+ A+D
Sbjct: 328 YDDEESVALKVQFAKD 343


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 513 QEIFCTVCGDPSS 475
           QE  C VCGD +S
Sbjct: 184 QEELCLVCGDRAS 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,056
Number of Sequences: 336
Number of extensions: 3223
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)