Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0555
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    55   1e-08
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    52   8e-08
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    36   0.006
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   3.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.7  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   8.2  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.2  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 26/79 (32%), Positives = 47/79 (59%)
 Frame = +1

Query: 445 SYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRREDIAEAIRTGFLDLDKKMSELXELSN 624
           S+F VFDGH G RV+ +C ++L ++   + SF + +  EA+++GFL  D  + +  ++  
Sbjct: 57  SFFGVFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQDRDMQ- 115

Query: 625 GKEKSGSTAVCAFVSPEQI 681
            ++ SG TA  A +   Q+
Sbjct: 116 -EDPSGCTATTALIVDHQV 133



 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +2

Query: 284 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 409
           MG  L++P   K++ SG    L +GV+ MQGWR+ MEDAH A
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCA 42


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +2

Query: 284 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 409
           MG  L++P T+K++ +G    + YG++SMQGWR+ MEDAH A
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSA 42



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 23/79 (29%), Positives = 41/79 (51%)
 Frame = +1

Query: 448 YFAVFDGHAGARVSAHCAENLLNVFCRRRSFRREDIAEAIRTGFLDLDKKMSELXELSNG 627
           +FAV+DGH G +V+  C  NL  +  +   F++ D   A+++ FL+ DK + +  +    
Sbjct: 57  FFAVYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHT- 115

Query: 628 KEKSGSTAVCAFVSPEQIY 684
            + SG TA        ++Y
Sbjct: 116 -DPSGCTATVVLRVGNKLY 133


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = +1

Query: 427 GTLSDWSYFAVFDGHAGARVSAHCAENLLNVFCRR-RSFRREDIAEAIRTGFLDLDKKMS 603
           G   D  + AV+DGHAG + S +C +NL  V   + R+     + + +   F++++ K++
Sbjct: 97  GGNQDDGFVAVYDGHAGIQASDYCQKNLHKVLLEKVRNEPDRLVTDLMDETFVEVNSKIA 156

Query: 604 ELXELSNGKEKSGSTAVCAFVSPEQIYIRELRRIL 708
           +    +   +  G TA  AF   E+      RR+L
Sbjct: 157 K----ATHNDICGCTAAVAFFRYEK---NRTRRVL 184


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 439 DWSYFAVFDGHAGARVSAHCAENLLNVFCR 528
           +W ++ +FDGH+G   S    ++L+    R
Sbjct: 113 NWYFWGIFDGHSGWNTSLFLRQHLVPAVVR 142


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 547  EDIAEAIRTGFLDLDKKMSELXELSNGKEKSG 642
            E I  A+R GFL L+KK+  +      K   G
Sbjct: 1066 EQICNALRRGFLRLNKKLGNVIHYDLRKSSEG 1097


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 581 RKPVRIASAMSSRRKLLRLQNTFKRFSAQCAETRAPACPSNTAKYDQSES 432
           +K  R+ S      K+ RLQ    RF+ + + T   +  +N A    SES
Sbjct: 521 KKKGRVLSETEQAEKIRRLQQQLDRFAGKTSPTSPES--NNAANVSDSES 568


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 511 LNVFCRRRSFRREDIAEAIRTGFLDLDK-KMSELXELSNGKEKSGSTAVCAFV 666
           L + CR + F R D A        + D+  +  +  +SNGK +S    +C FV
Sbjct: 657 LGMRCRNQLFSRLDQAP-YEPSTKNFDRGTIPSVLAVSNGKGESSDAIICVFV 708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,840
Number of Sequences: 5004
Number of extensions: 51710
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)