Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0555
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   31   1.2  
SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)                  30   1.6  
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)              30   2.2  
SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 445 SYFAVFDGHAGARVSAHCAENL 510
           +Y+AVFDGHAG R S   AE+L
Sbjct: 454 AYYAVFDGHAGPRASLFAAEHL 475


>SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 445 SYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRRED---IAEAIRTGFLDLDKKM 600
           ++ AVFDGH G   +      L     ++R F   D   + +AI+ GF+   + M
Sbjct: 54  AFIAVFDGHGGREAAVFARSRLWETIKKQRGFYSSDPEHVVKAIKEGFMATHRSM 108


>SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 439 DWSYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRREDIAEAIRTGFLDLDKKMSELXE 615
           D+ YFAVFDGH G   +    + L  +  R       D+ + +   F + D ++    E
Sbjct: 115 DFYYFAVFDGHGGVSSAEFAHDKLHEIVRRMHRDGENDLEKILVQAFEECDTELKRHLE 173


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
 Frame = +1

Query: 448 YFAVFDGHAGARVSAHCAENLLNVFCRR-RSFRREDIAE---------AIRTGFLDLDKK 597
           +FAVFDG+ GA  +   A+    V  R+  S  R  +A          A+R  + D+D+ 
Sbjct: 572 FFAVFDGYNGATAAGTSAKTFPEVLARKVESVYRPGLASEGVDAKITTALRETYEDVDRI 631

Query: 598 MSELXELSNGKEKSGSTAVCAFVSPEQIYIRELRRILAL 714
           +    +  +    SG +AV   +   ++YI     + A+
Sbjct: 632 LLYGVDEDSRNRWSGCSAVTCLLRGNKLYIANAGNVRAV 670


>SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)
          Length = 316

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +1

Query: 598 MSELXELSNGKEKSGSTAVCAFVSPE 675
           M +L + S+G++KSGSTA+   V+P+
Sbjct: 1   MQKLPKWSSGEDKSGSTAIALLVTPK 26


>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
          Length = 375

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 439 DWSYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRREDIAEAIRTGFLDLD 591
           +++YFAVFDGH G   +   A + L+ F  +     +D   A+   F + D
Sbjct: 75  NYAYFAVFDGHGGIDAATFAATH-LHCFLAQNEHLIKDPGLALHETFQNTD 124


>SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 547 EDIAEAIRTGFLDLDKKMSELXELSNGKE 633
           EDI E I    +DL KK SE+ E+++ KE
Sbjct: 235 EDINEKITALRIDLTKKESEIAEMAHDKE 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,983,232
Number of Sequences: 59808
Number of extensions: 409580
Number of successful extensions: 936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)