Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0555
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical pr... 70 1e-12
U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical p... 61 9e-10
Z46343-1|CAA86456.2| 356|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 54 8e-08
Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical pr... 54 1e-07
U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical p... 47 1e-05
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 38 0.007
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 38 0.007
Z81525-9|CAB04260.1| 242|Caenorhabditis elegans Hypothetical pr... 37 0.017
AL031264-1|CAA20326.1| 242|Caenorhabditis elegans Hypothetical ... 37 0.017
AC006834-5|AAF40007.1| 451|Caenorhabditis elegans Hypothetical ... 31 1.1
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 5.8
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 28 5.8
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 28 5.8
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical
protein F25D1.1a protein.
Length = 468
Score = 70.1 bits (164), Expect = 1e-12
Identities = 29/44 (65%), Positives = 38/44 (86%)
Frame = +2
Query: 281 SMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQ 412
+MGAFL+KP+T K N GEGNG+RYG++SMQGWR+ MED+H A+
Sbjct: 83 TMGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAE 126
Score = 54.0 bits (124), Expect = 1e-07
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Frame = +1
Query: 403 SRAXSTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRR-----ED----- 552
+ A + + DWS+FAVFDGHAG ++ + LL FR E+
Sbjct: 125 AEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHLISSEEFREMTKTLEENNGVL 184
Query: 553 -------IAEAIRTGFLDLDKKMSELXELSNGKEKSGSTAVCAFVSPEQIYIREL 696
+ + I+ GFL D E+ + SN KSG TAVCA V+P I L
Sbjct: 185 TDSTLKLLEKGIKKGFLSFD----EISKTSNDISKSGCTAVCAIVTPTHFIIGNL 235
>U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical
protein F42G9.1a protein.
Length = 491
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/48 (56%), Positives = 31/48 (64%)
Frame = +2
Query: 284 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQXQL*T 427
MGA+LNKP +K E G GNGL Y +MQGWRV EDAH+ L T
Sbjct: 1 MGAYLNKPIIEKEKEEGSGNGLSYACTTMQGWRVNQEDAHNCVVDLHT 48
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +1
Query: 436 SDWSYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRREDIAEAIRTGFLDLD------KK 597
+DW F V+DGH G VS + L + R+ + +D+AE ++ F+D D +
Sbjct: 48 TDWHMFGVYDGHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQKAFVDFDDFIRAEES 107
Query: 598 MSELXELSN-GK-EKSGSTA 651
M EL ++ + GK +K+G A
Sbjct: 108 MKELKDIGDEGKPKKAGGEA 127
>Z46343-1|CAA86456.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.1 protein.
Length = 356
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = +1
Query: 445 SYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRREDIAEAIRTGFLDLDKKMSELXELSN 624
++FAV+DGH G++VS + NL ++ F ++ EAI GFL+LD++M E +
Sbjct: 53 AFFAVYDGHGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQQMRVDEETKD 112
Query: 625 GKEKSGSTAVCAFVSPEQIY 684
+ SG+TAV + +Y
Sbjct: 113 --DVSGTTAVVVLIKEGDVY 130
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +2
Query: 284 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAH 403
MG L++P TKK + S G + MQGWRV+MEDAH
Sbjct: 1 MGQTLSEPVTKKESASCANENYLVGSSCMQGWRVDMEDAH 40
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = +1
Query: 421 LNGTLSDWSYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRR---EDIAEAIRTGFLDLD 591
+N L DW++ VFDGH G S + +LL + + F EDI EAIR GFL
Sbjct: 44 INNGLLDWTFVGVFDGHGGEHASEYVRRHLLMNITKNQKFESNSDEDILEAIRQGFLMTH 103
Query: 592 KKMSELXE-----LSNGKEKSGSTAVCAFVSPEQIY 684
++M + + S +G+T C F+ ++Y
Sbjct: 104 EQMRHVYDEWPYTASGYPSTAGTTVSCVFIRNGKLY 139
>Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical
protein F25D1.1b protein.
Length = 367
Score = 54.0 bits (124), Expect = 1e-07
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Frame = +1
Query: 403 SRAXSTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRR-----ED----- 552
+ A + + DWS+FAVFDGHAG ++ + LL FR E+
Sbjct: 24 AEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHLISSEEFREMTKTLEENNGVL 83
Query: 553 -------IAEAIRTGFLDLDKKMSELXELSNGKEKSGSTAVCAFVSPEQIYIREL 696
+ + I+ GFL D E+ + SN KSG TAVCA V+P I L
Sbjct: 84 TDSTLKLLEKGIKKGFLSFD----EISKTSNDISKSGCTAVCAIVTPTHFIIGNL 134
Score = 35.5 bits (78), Expect = 0.038
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2
Query: 353 YGVASMQGWRVEMEDAHHAQ 412
YG++SMQGWR+ MED+H A+
Sbjct: 6 YGMSSMQGWRICMEDSHIAE 25
>U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical
protein F42G9.1b protein.
Length = 469
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +1
Query: 436 SDWSYFAVFDGHAGARVSAHCAENLLNVFCRRRSFRREDIAEAIRTGFLDLD------KK 597
+DW F V+DGH G VS + L + R+ + +D+AE ++ F+D D +
Sbjct: 26 TDWHMFGVYDGHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQKAFVDFDDFIRAEES 85
Query: 598 MSELXELSN-GK-EKSGSTA 651
M EL ++ + GK +K+G A
Sbjct: 86 MKELKDIGDEGKPKKAGGEA 105
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 445 SYFAVFDGHAGARVSAHCAENLLNVFCRRRSFR--REDIAEAIRTGFLDLDKKMSELXEL 618
S AVFDGH G S + A +L + R R + + + +R LD++M+ +
Sbjct: 196 SVLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLDERMT----V 251
Query: 619 SNGKE--KSGSTAVCAFVSPEQ 678
+ KE K GSTAVC + +Q
Sbjct: 252 RSVKECWKGGSTAVCCAIDMDQ 273
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 445 SYFAVFDGHAGARVSAHCAENLLNVFCRRRSFR--REDIAEAIRTGFLDLDKKMSELXEL 618
S AVFDGH G S + A +L + R R + + + +R LD++M+ +
Sbjct: 196 SVLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLDERMT----V 251
Query: 619 SNGKE--KSGSTAVCAFVSPEQ 678
+ KE K GSTAVC + +Q
Sbjct: 252 RSVKECWKGGSTAVCCAIDMDQ 273
>Z81525-9|CAB04260.1| 242|Caenorhabditis elegans Hypothetical
protein F33A8.6 protein.
Length = 242
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 433 LSDWSYFAVFDGHAGARVSAHCAENL 510
LS S+FA+FDGHAG R + HC +
Sbjct: 65 LSRASFFAIFDGHAGPRAAEHCQSQM 90
>AL031264-1|CAA20326.1| 242|Caenorhabditis elegans Hypothetical
protein F33A8.6 protein.
Length = 242
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 433 LSDWSYFAVFDGHAGARVSAHCAENL 510
LS S+FA+FDGHAG R + HC +
Sbjct: 65 LSRASFFAIFDGHAGPRAAEHCQSQM 90
>AC006834-5|AAF40007.1| 451|Caenorhabditis elegans Hypothetical
protein ZK973.3 protein.
Length = 451
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 451 FAVFDGHAGARVSAHCAENLLNVFC 525
F VFDGH G + S H + NL C
Sbjct: 70 FGVFDGHGGQQCSRHISTNLYPYLC 94
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 576 TSTDCFSYVFTPETPPSAEYIQEIFCTVCGDPSSRMSIKHGEV 448
TS + +SY +TP P+A Y +V +P+ I H V
Sbjct: 2933 TSENTYSYAYTPHGGPTASYNTRPSRSVSTNPNGYSEITHPTV 2975
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 546 TPETPPSAEYIQEIFCTVCGDPSSRMSIKHGEVRPVRECTVQS*XCA*CASSISTR 379
T ++P S+ + + +FC +CGD R + KH C + C C + R
Sbjct: 13 TSQSPQSSSF-ENVFCAICGD---RATGKHYGAMSCDGCKAKRNSCRKCRFDVCLR 64
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 546 TPETPPSAEYIQEIFCTVCGDPSSRMSIKHGEVRPVRECTVQS*XCA*CASSISTR 379
T ++P S+ + + +FC +CGD R + KH C + C C + R
Sbjct: 56 TSQSPQSSSF-ENVFCAICGD---RATGKHYGAMSCDGCKAKRNSCRKCRFDVCLR 107
>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 685 CISVREKRKHTRPSNQTSLYRWT 617
C S+R++ HT S QT + +WT
Sbjct: 889 CASIRDRILHTSLSTQTMIRKWT 911
>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 685 CISVREKRKHTRPSNQTSLYRWT 617
C S+R++ HT S QT + +WT
Sbjct: 889 CASIRDRILHTSLSTQTMIRKWT 911
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,700
Number of Sequences: 27780
Number of extensions: 296167
Number of successful extensions: 790
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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