Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0555
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.54 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.54 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   8.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 392 EDAHHAQXQL*TVHSRTGRTSPCLMDMRELGSPHTVQKIS 511
           E A HA     +VHS   RT PCL+   +  +    Q++S
Sbjct: 606 EQAAHASASEESVHSMELRTLPCLLPRPKSENNFASQELS 645


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 392 EDAHHAQXQL*TVHSRTGRTSPCLMDMRELGSPHTVQKIS 511
           E A HA     +VHS   RT PCL+   +  +    Q++S
Sbjct: 574 EQAAHASASEESVHSMELRTLPCLLPRPKSENNFASQELS 613


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 353 SEDRFLPRSRYIFW--SRAYLKTPPYLVL 273
           SED  +PR  Y+ W  S   +K P   VL
Sbjct: 800 SEDSVIPRILYLTWYSSNGDIKVPSTKVL 828


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 271 FTVTLMHIISTPSGT*IHVAYDNVKDELK 185
           FT+ L  ++ +P G      YD +K +L+
Sbjct: 133 FTIELDRVLESPRGKYEFSKYDKLKKKLE 161


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 271 FTVTLMHIISTPSGT*IHVAYDNVKDELK 185
           FT+ L  ++ +P G      YD +K +L+
Sbjct: 148 FTIELDRVLESPRGKYEFSKYDKLKKKLE 176


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -3

Query: 539 KLLRLQNTFKRFSAQCAETRAPACPSNTAKYDQSESVPFRVEXARD 402
           K L + + +K F               + +YD +++ PF V+  RD
Sbjct: 30  KSLNVIHEWKYFDYDFGSEERRQAAIQSGEYDHTKNYPFDVDQWRD 75


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 271 FTVTLMHIISTPSGT*IHVAYDNVKDELK 185
           FT+ L  ++ +P G      YD +K +L+
Sbjct: 36  FTIELDKVLESPRGKYEFSKYDKLKKKLE 64


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 513 QEIFCTVCGDPSS 475
           QE  C VCGD +S
Sbjct: 183 QEELCLVCGDRAS 195


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 421 LNGTLSDWSYFAVFDGHAGARVSAHC 498
           L G L DW Y+   + HA       C
Sbjct: 118 LGGDL-DWKYYTTNESHACLSTGGSC 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,875
Number of Sequences: 438
Number of extensions: 4035
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)