Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0554
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.67 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   3.6  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.7  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   6.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
 Frame = +1

Query: 106 RQPSNRIGVGSLYGLMVFCTS----KLEVCYIEANGFYLGKLRGL---LGDGN 243
           R+P NRI   +  G +V C++      ++ ++ ++G  +G + GL   L +GN
Sbjct: 27  REPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGN 79


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 570 LLPAVLPNVCVKCTD 614
           +LP  L   C KCTD
Sbjct: 65  VLPDALKTSCAKCTD 79


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 411 FGGXSPLRTLSLFMDXSPFRQACIHAVTG 497
           +G  + L  LS+ +D  P+R  CI    G
Sbjct: 316 WGPDAGLGNLSVCIDQQPWRSYCIQPPCG 344


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 573 LPAVLPNVCVKCTD 614
           +P  L N C KC D
Sbjct: 62  IPDALKNECAKCND 75


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 582 RQGEGPVRARAAIPRPKSQASC 517
           R+G GP R+R  +P      +C
Sbjct: 329 RRGPGPARSRRHLPAHLVAGTC 350


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,519
Number of Sequences: 336
Number of extensions: 2556
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)