Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0554
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces...    30   0.23 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    29   0.53 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   2.8  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   3.8  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   8.7  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   8.7  

>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -3

Query: 614 ISTLDAYVRKYGREK--ARSGPELPFLVPNHKLRANL 510
           I+ LD Y+ +Y R K   +S  E+PFL  NH L+A++
Sbjct: 83  ITALD-YIAQYARYKIWVKSNGEMPFLYGNHVLKAHV 118


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 64  SKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVCYIEANGFYLGK 216
           + G P I+  +  ++ P   +     + +   C+  L VC+  A+G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNV----FFSIKTLCSKSLAVCFSVASGLWVGK 179


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 10  ERXIIELKENGQAILNGASKGFPIIEKDVFAFRQP-SNRIGVGSLYGLMVFCTSKLEVCY 186
           +  ++ +  NG+ +L+ AS  F  + K V     P  N   +       +FCTS L  CY
Sbjct: 62  QEEMVSVSRNGKQLLSEAS--FFRLGKHVHLNFLPFENTFEMALRNDFQIFCTSILFTCY 119

Query: 187 IEA 195
           I++
Sbjct: 120 IQS 122


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 10  ERXIIELKENGQAILNGASKGFPIIEKDVFAFRQ 111
           ER I++ K  GQ+ LN        +EK+V  F++
Sbjct: 182 EREILQNKNQGQSTLNSLKDRQQALEKEVNIFKE 215


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 24  RIERKWTGYSKRSFQRIP 77
           ++++ WT   KR F R+P
Sbjct: 610 KLKKSWTSQQKRDFSRLP 627


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +2

Query: 71  DSRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETV 241
           ++R+ ++   L  + +   VL  C++   +  LNL CA+  +    W N A+  + +
Sbjct: 705 NNRAREKSLDLLRSDSGTQVLL-CSLKCGALGLNLTCASRVILCDVWWNPAIEEQAI 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,909
Number of Sequences: 5004
Number of extensions: 43265
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)