Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0554
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0684 + 35531167-35532899,35533360-35533596,35533870-355340...    32   0.42 
08_01_0089 - 646310-646397,646566-647932                               31   0.96 
05_03_0458 + 14280953-14281866,14281964-14282912                       28   5.1  
03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676           28   6.8  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    27   8.9  

>03_06_0684 +
           35531167-35532899,35533360-35533596,35533870-35534032,
           35534112-35534174
          Length = 731

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 346 CTCGQLRARRYALPNSLSEVQIFPLGSLKSSKARCYRLRE 227
           C CG L + RY L N L++V  F L +L    A C  L E
Sbjct: 155 CKCGDLDSARYVL-NGLTQVDEFSLSALIYGYASCGHLHE 193


>08_01_0089 - 646310-646397,646566-647932
          Length = 484

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 396 AXEXVFGGXSPLRTLSLFMDXSPFRQACIHAVTGTDA-AKICTKLVIWDEEWQLWP*PGL 572
           A   V  G SP  ++S+F+  +      +HA     A A I   L I    W  +P  GL
Sbjct: 82  AVAEVEDGASPPSSISVFLRCNDEGAEFVHATAPDVAVADIAASLYIPRVVWSFFPLTGL 141

Query: 573 LPAV 584
           LPAV
Sbjct: 142 LPAV 145


>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 352 PXTPXT-SCTMHPSPPXXXRSSGEXRRXGPCHCSWTXRLSDKRVFTPSPXQTPQRFARS 525
           P  P T SC+ HP+PP     +                 S  +   P+  QTP RF  S
Sbjct: 77  PLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTRFLSS 135


>03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676
          Length = 240

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 424 DXPPKTXSXAGGRDASCSWXWEXSGACTCGQLRARRYALPNSLSEVQIFPLGSLKSSKAR 245
           D  P T +  GG D S +      GAC  G L  +RY + N+     +F  G   +S  +
Sbjct: 22  DWLPGTATFYGGADGSGTM----GGACGYGNLYDQRYGINNAALSTPLFNDG---ASCGQ 74

Query: 244 CY 239
           CY
Sbjct: 75  CY 76


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 324 ARSCPQVQAPEXSHXQLHDASLPPAXEXVFGGXSPLRTLSL 446
           A + P++  P  S  +   +S P      FGG +PLR L L
Sbjct: 113 AAAQPEMSWPRGSPPRCPSSSCPEPQRQEFGGGNPLRRLPL 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,659,562
Number of Sequences: 37544
Number of extensions: 328072
Number of successful extensions: 870
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)