Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0554
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21318-3|AAC46667.1|  175|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z73906-10|CAB54209.1|  530|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z73906-9|CAA98121.1|  571|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U21318-3|AAC46667.1|  175|Caenorhabditis elegans Hypothetical
           protein K03H9.1 protein.
          Length = 175

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +2

Query: 2   EDKSGXSSN*KKMDRLF*TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRC 181
           + +SG     K   +L   ++P+D    K + S+S  +A  S++     + +S+ L++R 
Sbjct: 65  DGRSGLLETFKDKSKLPVEKVPEDVLWEKALDSMSYEEARSSIVQALRENSNSSLLHIRA 124

Query: 182 ATLKLTAST---WVNFAVFSETVTTSLR 256
             L+ ++ +   W+  A+ ++ +   ++
Sbjct: 125 CKLEKSSESQYEWIKLALLNDKLDNRMQ 152


>Z73906-10|CAB54209.1|  530|Caenorhabditis elegans Hypothetical
           protein D2030.9b protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 489 VTGTDAAKICTKLVIWDEEWQLWP*PGLLPAVLPNVCV 602
           ++G +A + C +   WD  WQ  P PGL   V  +  V
Sbjct: 353 MSGVEATRACVQSQHWDYRWQPAP-PGLCQPVAGDTSV 389


>Z73906-9|CAA98121.1|  571|Caenorhabditis elegans Hypothetical
           protein D2030.9a protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 489 VTGTDAAKICTKLVIWDEEWQLWP*PGLLPAVLPNVCV 602
           ++G +A + C +   WD  WQ  P PGL   V  +  V
Sbjct: 394 MSGVEATRACVQSQHWDYRWQPAP-PGLCQPVAGDTSV 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,659
Number of Sequences: 27780
Number of extensions: 257397
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)