Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0554
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    28   0.063
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   4.1  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   9.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 0.063
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 56  TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSE 235
           T L  DSRS++RM + SVN     +L    + W   H +     + L     +  +VF+ 
Sbjct: 272 TVLWLDSRSTERMIAASVNLICH-ILCMSDLHWQLPHNSTNPPNILLYYRDSLALSVFAL 330

Query: 236 TVTTSLR*LQ 265
            +T  LR +Q
Sbjct: 331 ILTALLRKMQ 340


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 570 LLPAVLPNVCVKCT 611
           LLP VL N C +CT
Sbjct: 56  LLPEVLNNHCNRCT 69


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 570 LLPAVLPNVCVKCTD 614
           +LP  L   C KCTD
Sbjct: 67  VLPDALATDCKKCTD 81


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 570 LLPAVLPNVCVKCTD 614
           +LP  L   C KCTD
Sbjct: 67  VLPDALATDCKKCTD 81


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 570 LLPAVLPNVCVKCTD 614
           +LP  L   C KCTD
Sbjct: 67  VLPDALATDCKKCTD 81


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 307 PNSLSEVQIFP 275
           PN LSE +IFP
Sbjct: 292 PNFLSEAKIFP 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,239
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)