Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0554
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C...    28   4.3  
At1g73700.1 68414.m08534 MATE efflux family protein similar to r...    28   4.3  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   5.7  
At5g65000.2 68418.m08176 nucleotide-sugar transporter family pro...    27   9.9  
At5g65000.1 68418.m08175 nucleotide-sugar transporter family pro...    27   9.9  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    27   9.9  

>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; similar to protein phosphatase 2C (GI:10432446)
           [Nicotiana tabacum]
          Length = 416

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 27  IERKWTGYSKRSFQRIPD 80
           +ERKW G  KRSF+R+ +
Sbjct: 188 VERKWRGVMKRSFKRMDE 205


>At1g73700.1 68414.m08534 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 39  WTGYSKRSFQRIPDHRKGCVRFPS 110
           WTG+SK +FQ + D  K  + FPS
Sbjct: 235 WTGFSKEAFQELYDFSK--IAFPS 256


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 10  ERXIIELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFC 162
           E   ++L E G++  NG   G P  E++   F +  N+ G G    +  +C
Sbjct: 70  EDDYVKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYC 120


>At5g65000.2 68418.m08176 nucleotide-sugar transporter family
           protein low similarity to SP|Q9Y2D2 UDP
           N-acetylglucosamine transporter {Homo sapiens}; contains
           Pfam profile PF04142: Nucleotide-sugar transporter
          Length = 260

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 364 WEXSGACTCGQLRARRYALPNSLSEVQIFPLGSLKSS 254
           W   G+ T   L A  YAL NSL ++    L SL  S
Sbjct: 77  WTLMGSLTASGLPAAIYALQNSLLQISYRSLDSLTFS 113


>At5g65000.1 68418.m08175 nucleotide-sugar transporter family
           protein low similarity to SP|Q9Y2D2 UDP
           N-acetylglucosamine transporter {Homo sapiens}; contains
           Pfam profile PF04142: Nucleotide-sugar transporter
          Length = 325

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 364 WEXSGACTCGQLRARRYALPNSLSEVQIFPLGSLKSS 254
           W   G+ T   L A  YAL NSL ++    L SL  S
Sbjct: 77  WTLMGSLTASGLPAAIYALQNSLLQISYRSLDSLTFS 113


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 116 ATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETVT 244
           AT ++L HC +     +LN+RCA  + T     N  V   T+T
Sbjct: 201 ATGNLLYHCDIC--KFNLNMRCAIREPTPVALSNMKVHEHTLT 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,974,102
Number of Sequences: 28952
Number of extensions: 248531
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)