Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0553
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    28   1.3  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    27   2.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I...    26   5.1  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   6.7  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   6.7  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   8.9  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 538 EEQFGVTIEEKEFQKEKLNEKKG 606
           EE+  V IEEK F+ E L +KKG
Sbjct: 82  EEKSAVGIEEKSFKDEHLAQKKG 104


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 215 FYEKIKAEPTQFLRYMEGHVKYIW 286
           F + I+ +PT+F+RY E  V+Y W
Sbjct: 415 FEDAIRGDPTKFIRYDE--VEYAW 436


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 34  KNIL*LL-EVIQKLVNMKYM*SSHLLMTLLIGDYV 135
           KNI+ LL E+I+ ++N+    ++  L+TLLIG Y+
Sbjct: 775 KNIIKLLLELIEVILNVNVSTTAMCLLTLLIGIYL 809


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 433 LSSEERQCNYERYRILGT--KCFSRNN*EKFLQQLEIEEQFGVTIEEKEFQKEKLNEKKG 606
           LS+     +Y R R+L    KC   NN  + ++  ++E  FG     + +     N K+ 
Sbjct: 435 LSNASSNQDY-RVRVLSRNFKCIDLNNVPEIIKNAKVESSFGTVYRSERYGLRGCNGKEL 493

Query: 607 TGAAIA 624
           +   IA
Sbjct: 494 SNILIA 499


>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
           subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 418 VPPEDLSSEERQCNYERYRILGTKCFSRNN*EKFLQQLEIEEQFGVTIEEKEFQKEKL 591
           V  ED ++      YER RILGT+    +     L  LE E    + I  KE  ++K+
Sbjct: 64  VAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETD-PLQIAMKELAQKKI 120


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +2

Query: 128 IMWHEARKQERMIRGMIVDYRRRAERRKDFYEKIKAEPTQFLRYMEGHVK 277
           + + +  K + +IR  +++Y  RAE+ K + ++   + +   R   G+V+
Sbjct: 44  LKYEKNEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVE 93


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 514 KFLQQLEIEEQFGVTIEEKEFQKEKLNEKKGTGAAI 621
           K L QL  EE FG  +E+    +E L    G  AAI
Sbjct: 729 KLLSQLSREESFGPLVEKLTAIREILRGTSGFKAAI 764


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 384 MSSHIKSINHIARVTLPWHHYSWTFSSSSNCRI 286
           +SS  K I  +A  TLPW  Y+W+    S  +I
Sbjct: 304 LSSSSKYIFWLAIATLPW--YNWSILEKSKIKI 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,776
Number of Sequences: 5004
Number of extensions: 58238
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)