Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0553
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209...    60   2e-09
07_03_1658 + 28430772-28430841,28430954-28431044,28431177-28431321     30   2.3  
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478...    29   3.0  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    28   9.3  

>03_03_0248 +
           15819264-15819460,15820691-15820729,15820797-15820936,
           15821150-15821225,15822866-15823160,15823236-15823342,
           15823442-15823489,15823568-15823853,15823954-15823961,
           15824083-15824184,15824426-15824553,15824664-15824741,
           15825047-15825145,15825247-15825302
          Length = 552

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 5/153 (3%)
 Frame = +1

Query: 214 FLRKNQSRANTVFTLHGRPCKIHLDPTIAAAGEGPAIMMPWQGDPSNMIDRFDVRAHLDC 393
           +L + +   +    + G  C++H D  +  A E    ++PW G    +IDRFD RA LD 
Sbjct: 29  YLARRRGDPHQSLQVSGARCRVHRDDALYQATEDQQGLIPWNGKQDVLIDRFDGRALLDF 88

Query: 394 IPEIKYPYVPPEDLSSEERQ----CNYERYR-ILGTKCFSRNN*EKFLQQLEIEEQFGVT 558
           I +        ++ S EE +     N+ERYR ++  +       +   Q+LE +     +
Sbjct: 89  IRDSSSRPFRVQEKSEEEEELEEFVNFERYRDLIKHRLSDEAGLQHVSQELEAKAILPFS 148

Query: 559 IEEKEFQKEKLNEKKGTGAAIAYNYNDPGSQPS 657
            E+   Q  +    KGT + + Y+Y   G++ S
Sbjct: 149 FEKP--QSSQTPASKGTYSQVGYSYKGDGNEES 179



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +2

Query: 131 MWHEARKQERMIRGMIVDYRRRAERRKDFYEKIKAEPTQFLR 256
           MWHEARK ER +  ++   RRRA+RR  +  + + +P Q L+
Sbjct: 1   MWHEARKSERKVHDLMDAARRRAQRRAAYLARRRGDPHQSLQ 42


>07_03_1658 + 28430772-28430841,28430954-28431044,28431177-28431321
          Length = 101

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 604 GTGAAIAYNYNDPGSQPSTSNVHSVLH 684
           G  ++IAYN++ PG + S   +H+ LH
Sbjct: 30  GVASSIAYNWSRPGMKTSVKIIHARLH 56


>01_06_0634 +
           30746767-30747012,30747083-30747118,30747554-30747850,
           30748482-30748544,30748643-30748696,30748837-30748854,
           30749554-30749625,30749731-30749787,30750160-30750236,
           30751013-30751094,30751585-30751701,30752083-30752210,
           30753074-30753143,30753725-30753765,30753963-30753990,
           30754151-30754210
          Length = 481

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +1

Query: 382 HLDCIPEIKYPYVPPEDLSSEERQCNYERYRILGTKCFSRNN*EKFLQQLEIEEQFGVTI 561
           H+ C P   YP  P E+L   +   N +R   +  +   +N  ++ +  +E  +  G  I
Sbjct: 169 HIACFPSSTYPAFPVENLKGFDSIENCKRDGNVTDQLNEQNLKKEVVHSMEDSKGTGNNI 228

Query: 562 E--EKEFQKEKLNEKKGTGAAIAYNYND 639
           E  +  ++ E L   K  G  I ++ +D
Sbjct: 229 EGVKSVYKAEMLAGDKRAGPVIPFSVSD 256


>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
            31227790-31228014,31228097-31228255,31228393-31228551,
            31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 532  EIEEQFGVTIEEKEFQKEKL-NEKKGTGAAIA 624
            E++ ++ +T+EEK+   EK  + KK  G AIA
Sbjct: 1534 ELKSKYNITLEEKQLLNEKYESAKKELGEAIA 1565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,412,916
Number of Sequences: 37544
Number of extensions: 354849
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)