Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0553
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17529| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)                 54   1e-07
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    29   3.1  
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_46841| Best HMM Match : zf-AN1 (HMM E-Value=2.4)                    29   4.1  
SB_40032| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    29   5.4  
SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)                28   7.2  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   7.2  
SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      28   9.5  
SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11)                   28   9.5  

>SB_17529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 26/47 (55%), Positives = 38/47 (80%)
 Frame = +2

Query: 131 MWHEARKQERMIRGMIVDYRRRAERRKDFYEKIKAEPTQFLRYMEGH 271
           MWHEAR+ E+ +RGM+V+Y++RAERR+ FY K+K + TQ +R + GH
Sbjct: 1   MWHEARRVEKQLRGMMVNYKKRAERRRAFYNKMKQDSTQLIR-IYGH 46



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 22/50 (44%), Positives = 32/50 (64%)
 Frame = +1

Query: 214 FLRKNQSRANTVFTLHGRPCKIHLDPTIAAAGEGPAIMMPWQGDPSNMID 363
           F  K +  +  +  ++G  CKIH+D  +AAA E  ++MMPWQG+  NMID
Sbjct: 29  FYNKMKQDSTQLIRIYGHSCKIHIDAQVAAAAESKSVMMPWQGNSDNMID 78


>SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)
          Length = 544

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 20/36 (55%), Positives = 27/36 (75%)
 Frame = +1

Query: 256 LHGRPCKIHLDPTIAAAGEGPAIMMPWQGDPSNMID 363
           ++G  CKIH+D  +AAA E  ++MMPWQG+  NMID
Sbjct: 182 IYGHSCKIHIDAQVAAAAESKSVMMPWQGNSDNMID 217


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 190 TIIHDHS-TYHTLLFSCLVPHNH 125
           TIIH HS ++H L F+C + H H
Sbjct: 377 TIIHTHSHSHHALSFTCTLIHTH 399



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 190 TIIHDHSTYHTLLFSCLVPHNH 125
           TIIH HS  HTL F+  + H H
Sbjct: 243 TIIHTHSPSHTLSFTRTLIHTH 264



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 190 TIIHDHSTYHTLLFSCLVPHNHRLIVSLINVTITYI 83
           T+IH HS  H LLF+  + H H    SL+  T T I
Sbjct: 296 TLIHTHSYSHALLFTRTLIHTHSHPHSLL-FTFTII 330



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 190 TIIHDHSTYHTLLFSCLVPHNH 125
           T+IH HS  H LLF+  + H H
Sbjct: 259 TLIHTHSHSHALLFTRTLIHTH 280


>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1678

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 276 NTFGSYNCCCWRRSSYNDA 332
           NT+GSY C C R  ++ND+
Sbjct: 804 NTYGSYKCSCKRGYAHNDS 822


>SB_46841| Best HMM Match : zf-AN1 (HMM E-Value=2.4)
          Length = 266

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 745 QIRVIIRIPSCSVFFDLRACNVTLNAHLKWKVASLDHYNCKLLL 614
           +  V++ I  C V   +  CNV ++ H    + S+D   CKLL+
Sbjct: 59  ECNVLMSIHECKVLMSIHECNVLMSMHECNVLMSID--ECKLLM 100



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 745 QIRVIIRIPSCSVFFDLRACNVTLNAHLKWKVASLDHYNCKLLLHQ 608
           +  V++ I  C V   +  CNV ++ H    + S+D  N  + +H+
Sbjct: 131 ECNVLMSIHECKVLMSIYECNVLMSMHECNVLMSIDECNVLMSIHE 176



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 745 QIRVIIRIPSCSVFFDLRACNVTLNAHLKWKVASLDHYNCKLLL 614
           +  V++ I  C+V   +  CNV ++ H + KV  +  Y C +L+
Sbjct: 113 ECNVLMSIHECNVLMSIHECNVLMSIH-ECKVL-MSIYECNVLM 154


>SB_40032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 745 QIRVIIRIPSCSVFFDLRACNVTLNAHLKWKVASLDHYNCKLLL 614
           +  V++ I  C V   +  CNV ++ H    + S+D   CKLL+
Sbjct: 131 ECNVLMSIHECKVLMSIHECNVLMSMHECNVLMSID--ECKLLM 172



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 745 QIRVIIRIPSCSVFFDLRACNVTLNAHLKWKVASLDHYNCKLLLHQ 608
           +  V++ I  C V   +  CNV ++ H    + S+D  N  + +H+
Sbjct: 203 ECNVLMSIHECKVLMSIYECNVLMSMHECNVLMSIDECNVLMSIHE 248



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 745 QIRVIIRIPSCSVFFDLRACNVTLNAHLKWKVASLDHYNCKLLL 614
           +  V++ I  C+V   +  CNV ++ H + KV    H  CK+L+
Sbjct: 50  ECNVLMSINECNVLMSINECNVMMSIH-ECKVLMSIH-ECKVLM 91



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 745 QIRVIIRIPSCSVFFDLRACNVTLNAHLKWKVASLDHYNCKLLL 614
           +  V++ I  C+V   +  CNV ++ H + KV  +  Y C +L+
Sbjct: 185 ECNVLMSIHECNVLMSIHECNVLMSIH-ECKVL-MSIYECNVLM 226


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 490 ILCQESYNAHNCIVFLLNLNPLEAHRDI*FLVCSLNELSHQIYQSYCS 347
           I C    ++H  ++ + +  PL AH D+  ++CS   + H++  S CS
Sbjct: 156 IACSCRCDSHRLLMSMCS--PLSAHVDVFPIMCSCRCVPHRMLMSMCS 201


>SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)
          Length = 988

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 637 DPGSQPSTSNVHSVLHYRPGGQKK 708
           +PGS P  SNV+ +L + P GQ++
Sbjct: 492 EPGSTPLGSNVNGLLSFTPHGQQE 515


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 430 PLEAHRDI*FLVCSLNELSHQIYQSYCSGHLAMA 329
           P  AH D+  + CS     + +  S CS H+ M+
Sbjct: 491 PSRAHVDVFLIACSCRCFPYHVLMSMCSPHVLMS 524


>SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 529 LEIEEQFGVTIEEKEFQKEKLNEKKGTGAA 618
           LE   Q+G + EE+E +KEK  +KK   AA
Sbjct: 218 LEYGWQYGFSKEEREKEKEKAEKKKAAVAA 247


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 451 VFLLNLNPLEAHRDI*FLVCSLNELSHQIYQSYCS 347
           V +   +P  AH D+  + CS   +SH++  S CS
Sbjct: 255 VLMSMCSPSRAHVDVFPIACSCRCVSHRVLMSMCS 289



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 451 VFLLNLNPLEAHRDI*FLVCSLNELSHQIYQSYCS 347
           VF+   +P  AH D+  + CS   + H++  S CS
Sbjct: 684 VFMSMCSPSRAHVDVFPIACSCRCVPHRLLMSMCS 718


>SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11)
          Length = 159

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 595 EKKGTGAAIAYNYNDPGSQPSTSNV--HSVLHYRPG 696
           + + TG   AYN+  PG  PSTS +   +V++  PG
Sbjct: 76  KNESTGYIKAYNWTFPGGTPSTSTLAEPTVVYNTPG 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,690,767
Number of Sequences: 59808
Number of extensions: 419602
Number of successful extensions: 1351
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)