Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0553
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    67   1e-11
U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing facto...    33   0.29 
U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor...    33   0.29 
U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.       33   0.29 
U06933-1|AAA64938.1|  551|Caenorhabditis elegans CeSWAP protein.       30   2.1  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL034393-27|CAH19090.1|  710|Caenorhabditis elegans Hypothetical...    28   8.3  
AL008866-2|CAA15508.2|  710|Caenorhabditis elegans Hypothetical ...    28   8.3  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 6/134 (4%)
 Frame = +1

Query: 256 LHGRPCKIHLDPTIAAAGEGPAIMMPWQGDPSNMIDRFDVRAHLDCIPEIKYPYVPPE-- 429
           +HGR  +IH D  IA A E   I+ PWQGD +  IDRFD R+HL  +  +    + P+  
Sbjct: 43  IHGRKAQIHADLGIARAAEDANILRPWQGDSTITIDRFDARSHLSKMDLVDIDEIIPKTK 102

Query: 430 -DLSSEERQ--CNYERYRILGTKCFSRNN*EKFLQQLEIEEQFGVTIE-EKEFQKEKLNE 597
            ++  E+ Q   ++ERYR+L    + + + + +L+++   E +    +  ++ + EK  +
Sbjct: 103 TEIVDEKEQIVTDFERYRVLIINDYKKVSEKHYLKKIADREFWCAEKDNNRKVETEKKKK 162

Query: 598 KKGTGAAIAYNYND 639
                + I ++Y+D
Sbjct: 163 SAEKKSTIGFSYDD 176



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 18/42 (42%), Positives = 34/42 (80%)
 Frame = +2

Query: 131 MWHEARKQERMIRGMIVDYRRRAERRKDFYEKIKAEPTQFLR 256
           MWHEAR+QE+++R  ++D  +RAER++ ++E ++ +P QF++
Sbjct: 1   MWHEARRQEKILRTTMIDQSKRAERKRRYFENVRKDPDQFMQ 42


>U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           a protein.
          Length = 749

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 328 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 471
           +P  GDP N +DR+D R  L  I   IK    P E     + EE  C  ERY
Sbjct: 44  VPCLGDPENRVDRYDCRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 95


>U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           d protein.
          Length = 751

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 328 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 471
           +P  GDP N +DR+D R  L  I   IK    P E     + EE  C  ERY
Sbjct: 48  VPCLGDPENRVDRYDCRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 99


>U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.
          Length = 749

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 328 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 471
           +P  GDP N +DR+D R  L  I   IK    P E     + EE  C  ERY
Sbjct: 44  VPCLGDPENRVDRYDCRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 95


>U06933-1|AAA64938.1|  551|Caenorhabditis elegans CeSWAP protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 328 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 471
           +P  GDP N +DR+  R  L  I   IK    P E     + EE  C  ERY
Sbjct: 44  VPCLGDPENRVDRYGFRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 95


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 149 KQERMIRGMIVDYRRRAERRKDFYEKIKAE 238
           K+E   R    DY R  ERRKD YEK K++
Sbjct: 183 KREDKKRDDRKDYERDRERRKDDYEKEKSK 212


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 149  KQERMIRGMIVDYRRRAERRKDFYEKIKAE 238
            K+E   R    DY R  ERRKD YEK K++
Sbjct: 948  KREDKKRDDRKDYERDRERRKDDYEKEKSK 977


>AL034393-27|CAH19090.1|  710|Caenorhabditis elegans Hypothetical
           protein B0019.2 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
 Frame = +1

Query: 262 GRPCKIHLDPTIAAAGEGPAIMMPWQGDP----SNMIDRFDV---RAHLDCIPEIKYPYV 420
           GRP K   +  +A   E    ++P + +P      +ID  DV       + IPEI+ PY 
Sbjct: 531 GRPRKSAPEAHVAPITEKLEELLPVENEPIEIKQEIIDYDDVPVLETKPEKIPEIEAPYF 590

Query: 421 PPEDLSSEERQCNYERYRILGTKCFSRNN*EKFLQQLEIE 540
           P E  S    + +   +  +     S N  EK+ +  E E
Sbjct: 591 PQESSSPAPNRSSVPYFPRISPSTESLNFVEKWEETQESE 630


>AL008866-2|CAA15508.2|  710|Caenorhabditis elegans Hypothetical
           protein B0019.2 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
 Frame = +1

Query: 262 GRPCKIHLDPTIAAAGEGPAIMMPWQGDP----SNMIDRFDV---RAHLDCIPEIKYPYV 420
           GRP K   +  +A   E    ++P + +P      +ID  DV       + IPEI+ PY 
Sbjct: 531 GRPRKSAPEAHVAPITEKLEELLPVENEPIEIKQEIIDYDDVPVLETKPEKIPEIEAPYF 590

Query: 421 PPEDLSSEERQCNYERYRILGTKCFSRNN*EKFLQQLEIE 540
           P E  S    + +   +  +     S N  EK+ +  E E
Sbjct: 591 PQESSSPAPNRSSVPYFPRISPSTESLNFVEKWEETQESE 630


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 511 EKFLQQLEIEEQFGVTIEEKEFQKEKLN-----EKKGTGAAIAYNYNDPGSQ 651
           + FL   +I+   G   E+   ++EK +     +KKG GA   Y  +DPG +
Sbjct: 791 KSFLSSSDIKRVDGNRFEKDPLEEEKCSAEPGLKKKGDGACGIYEVHDPGER 842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,423,173
Number of Sequences: 27780
Number of extensions: 330947
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)