Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0553
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36980.1 68417.m05240 expressed protein                             48   5e-06
At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)           29   4.4  
At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)           29   4.4  
At4g04070.1 68417.m00576 hypothetical protein low similarity to ...    28   5.9  
At3g19300.1 68416.m02448 protein kinase family protein contains ...    28   5.9  

>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
 Frame = +1

Query: 262 GRPCKIHLDPTIAAAGEGPAIMMPWQGDPSNMIDRFDVRAHLDCIPEIKYPYVPPEDLSS 441
           G   ++  D  +  A E    ++PW G    MIDRFD RA LD + E     V P   + 
Sbjct: 45  GSRYRVFRDDGLYQATEDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTE 104

Query: 442 EERQ----CNYERYRILGTKCFSRNN*EKFLQQL--EIEEQFGVTIEEKEFQKEKLNEKK 603
           EE +     N+ERYR L        + E+ LQ +  E+E +          Q  +    K
Sbjct: 105 EEEELEEFVNFERYRDLIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANK 164

Query: 604 GTGAAIAYNYNDPGSQPS 657
           GT + + ++Y   G   S
Sbjct: 165 GTYSQVGFSYAGNGKDNS 182



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +2

Query: 131 MWHEARKQERMIRGMIVDYRRRAERRKDFYEKIKAEPTQFLR 256
           MWHEAR+ E+ +  M+   R+RA+RR  +  K + +P Q ++
Sbjct: 1   MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQ 42


>At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)
          Length = 627

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 375 HIKSINHIARVTLPWHHYSWTFSSSSNCRIQM--YFTWPS 262
           H  + N    + LP HH  + F+  +  + Q   +FTWPS
Sbjct: 92  HNNNNNSTLHMLLPNHHQGFAFTDENTMQPQQQQHFTWPS 131


>At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)
          Length = 627

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 375 HIKSINHIARVTLPWHHYSWTFSSSSNCRIQM--YFTWPS 262
           H  + N    + LP HH  + F+  +  + Q   +FTWPS
Sbjct: 92  HNNNNNSTLHMLLPNHHQGFAFTDENTMQPQQQQHFTWPS 131


>At4g04070.1 68417.m00576 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 728

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 286 DPTIAAAGEGPAIMMPWQGDPSNMIDRFDVRAHLDCIPEIKYPYVPPEDLSSEE 447
           D  +AA    PA+  P    P+  +D  +    ++ +P+   P +PP+  S+ E
Sbjct: 209 DRIVAALAVAPAV--PAIVPPTAQLDPIEEVPRIEPVPQADLPIIPPDSSSTSE 260


>At3g19300.1 68416.m02448 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 663

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 211 LTPLSSPTIIHDHSTYHTLLFSCLVPHN--HRLIVSLINVTITYISY*QVSVLLLKV 47
           L+P +SP ++ D  +   L+ S L  H+  H  +V  I + +T  +   V VL++ +
Sbjct: 219 LSPEASPPVLADSPSSDNLVLSPLKSHHPYHLTMVPTIGIAVTVFALVMVVVLIVLI 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,382
Number of Sequences: 28952
Number of extensions: 297012
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)