Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0552
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 42 8e-05
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 40 3e-04
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 30 0.35
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 29 0.81
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 29 1.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.4
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.9
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 3.3
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 27 3.3
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.7
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 26 5.7
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 5.7
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 7.5
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 10.0
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 42.3 bits (95), Expect = 8e-05
Identities = 26/88 (29%), Positives = 48/88 (54%)
Frame = +2
Query: 263 DMLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAF 442
+ML D R Y A+ ++ H K VLD+G GTG+LS+ A++GA + +
Sbjct: 31 EMLKDDVRTLSYRDAI---MQNPHLFRDKI-VLDVGCGTGILSMFCARAGAKHVYGVD-M 85
Query: 443 QPMAECCLRILECNGVADKVTVSQKDLQ 526
+ ++I+E N ++D++T+ Q ++
Sbjct: 86 SEIIHKAVQIVEVNKLSDRITLIQGKME 113
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +2
Query: 266 MLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQ 445
ML+D+ R + Y H K VLD+G GTG+LS+ AK+GA + A +
Sbjct: 233 MLNDSVRTEGYRD---FVYHNKHIFAGKT-VLDVGCGTGILSMFCAKAGAKKVYAVDNSD 288
Query: 446 PMAECCLRILECNGVADKVT 505
+ E NG+AD++T
Sbjct: 289 IIQMAISNAFE-NGLADQIT 307
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 30.3 bits (65), Expect = 0.35
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 356 VLDIGTGTGLLSIMAAKSGA 415
VL++G GTGL+SI+ AK G+
Sbjct: 174 VLELGAGTGLVSILCAKMGS 193
>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 227 RLSPRDRQITFAD-MLHDTERNQKYSKALKLAIEKMHNDGKK 349
R+ R+R+ T D +LHD+ER + Y K L ++K G+K
Sbjct: 174 RIPTRERKETIVDELLHDSER-RSYFKKKYLELQKSKMSGRK 214
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +2
Query: 341 GKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMA 454
GKK +LDIG G G+LS A+ GA ++ A +A PMA
Sbjct: 78 GKK--ILDIGCGGGILSESMARLGA-SVTAVDA-SPMA 111
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 508 NSYLISHTIAFQYPETAFSHRLKSLTSNNSV 416
NS ++ + Q E FSH++K LTS N +
Sbjct: 290 NSLIMEYKNELQSAEEHFSHKIKELTSENEL 320
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +2
Query: 344 KKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVSQKDL 523
KK N+ + GT L I + +TI+ + CCL + +GVA++ S+ +
Sbjct: 95 KKINLRQLPVGTELQKIGWLRE-VNTIILTSKNGDILGCCLTPEDKSGVANEKYTSEGSI 153
Query: 524 QN*LLVKMEI*NKKLTF*SLKC 589
Q+ L ++ + N ++ SL C
Sbjct: 154 QDFSLSRIGLSNNPIS--SLVC 173
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 463 TAFSHRLKSLTSNNSVST*FCCHYGEEPCTCANI 362
++ SHR K LTS++++ FC G+ P +I
Sbjct: 307 SSLSHRRKLLTSHSTLKICFCRSRGDPPIVLESI 340
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -3
Query: 609 PN*LCIKHFSD*NVSFLFHISIFTNSQFCRSFWETVTLSATPLHSNILRQ 460
PN F V F ++ + + RS+W+ TL PL + RQ
Sbjct: 90 PNYFAKSEFRGFYVLFWLSMAAWVLQLYARSYWQRDTLLGLPLARQVFRQ 139
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 5.7
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +2
Query: 269 LHD-TERNQKYSKALKLAIEKMHNDGK--KANVLDIGTGTGLLSIMAAKSGADTIVACEA 439
LHD E+ K K LK I + D + KAN D G ++++ + A +
Sbjct: 156 LHDLNEQKDKKIKELKERINDLTYDYETLKANADD---SEGKQTLVSKREAALEEFQSKL 212
Query: 440 FQPMAECCLRILECNGVADKVTVSQKDLQN*LLVKMEI*NKKL 568
E R L+ NG D + +KDL+N LL K+E K L
Sbjct: 213 LIRENEINKRELKMNGKEDDLKKREKDLENRLL-KVEEHEKSL 254
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 308 LKLAIEKMHNDGKKANVLDIGTGTGLLSIMAA 403
L + K + N L++G GTGL+ I AA
Sbjct: 123 LSANLPKWEDLSNSINALELGAGTGLVGISAA 154
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 691 YTLKLF-ECPILQKWNKLNGSSC-EXANLSPRLPKKG 795
++ KLF CP+L KW+K++ + + R+P +G
Sbjct: 64 FSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRG 100
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 51 ACKYMNTIYKVTFFNYLLASSHKRFK 128
A KY+N I + F NY L +S K K
Sbjct: 291 ASKYLNAISDIPFLNYELITSTKLAK 316
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 344 KKANVLDIGTGTGLLSIMAAKSGADTIV 427
KK ++DIG G G L++ DT+V
Sbjct: 80 KKVEIVDIGCGYGGLTVALGPQFPDTLV 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,611
Number of Sequences: 5004
Number of extensions: 68589
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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