Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0552
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 49 4e-06
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 48 7e-06
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 46 5e-05
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 42 6e-04
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 39 0.006
06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37... 36 0.040
09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665... 32 0.49
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 31 0.85
02_02_0106 + 6814391-6817007,6817086-6817462 30 2.0
01_01_0130 + 1182504-1182817,1183024-1183152,1183582-1183716,118... 30 2.0
02_02_0109 + 6830802-6833412,6833491-6833861 30 2.6
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306... 29 4.5
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +2
Query: 263 DMLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAF 442
+ML D R + Y AL L + N A VLD+G GTG+LS+ AAK+GA ++A +
Sbjct: 268 EMLGDKVRTEAYRDAL-LGNPSLMNG---ATVLDVGCGTGILSLFAAKAGASRVIAVDGS 323
Query: 443 QPMAECCLRILECNG 487
M + + NG
Sbjct: 324 AKMVSVATEVAKSNG 338
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 48.4 bits (110), Expect = 7e-06
Identities = 34/92 (36%), Positives = 50/92 (54%)
Frame = +2
Query: 263 DMLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAF 442
+ML D R Y A+ H+ K VLD+GTG+G+L+I +A++GA + A EA
Sbjct: 44 EMLCDRVRMDAYHSAV---FRNAHHFRGKV-VLDVGTGSGILAIWSAQAGARKVYAVEAT 99
Query: 443 QPMAECCLRILECNGVADKVTVSQKDLQN*LL 538
MAE + N VAD V V Q +++ +L
Sbjct: 100 N-MAEHARELARANDVADIVEVIQGSMEDVVL 130
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 45.6 bits (103), Expect = 5e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +2
Query: 266 MLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQ 445
M+ D R Y A+ + +GK V+D+G GTG+LS+ A++GA + A EA +
Sbjct: 61 MIKDRVRTDAYRSAIMH--HQKFIEGKV--VMDVGCGTGILSVFCARAGAKCVYAVEASE 116
Query: 446 PMAECCLRILECNGVADKVTV 508
MA I++ N + DKV V
Sbjct: 117 -MATQAREIVKANNLDDKVVV 136
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 FADMLHDTERNQKYSKA--LKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVA 430
+ +LH Q + + A+ + +D + V+D+G G+G+LS+ AA++GA + A
Sbjct: 175 YGQLLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGSGILSLFAAQAGARHVYA 234
Query: 431 CEAFQPMAECCLRILECN-GVADKVTV 508
EA + MAE R++ N + ++TV
Sbjct: 235 VEASE-MAEHAQRLISGNPSLGQRITV 260
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +2
Query: 356 VLDIGTGTGLLSIMAAKSGADTIVACEAFQPMAECCLRILECNGVADKVTV 508
VLD+G GTG+LSI A +GA + A +A +A + I+ N ++DKV V
Sbjct: 85 VLDVGCGTGVLSIFCAFAGAARVYAVDA-SDIALQAMEIVRENELSDKVIV 134
>06_01_0038 +
375893-376093,376758-376883,376978-377177,377411-377502,
377966-378222,378610-378846,378986-379063,380422-380571,
380646-380720,381109-381205,381289-381341
Length = 521
Score = 35.9 bits (79), Expect = 0.040
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 508 FPKRSTELTVGENGDMKQKANILVTEVFDTELIGEEL 618
F KRS EL V + D+ A+ILV+E+ D+EL+GE L
Sbjct: 47 FHKRSDELKVRD--DLDSPADILVSEILDSELLGEGL 81
Score = 33.1 bits (72), Expect = 0.28
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 386 LSIMAAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVSQK 517
L+ + ++ ++ ACE++ PM + R+L NG+ ++V V K
Sbjct: 6 LAAVGGETRGGSVSACESYLPMGKLMRRVLRANGMENRVKVFHK 49
>09_03_0035 -
11765108-11765376,11765909-11766005,11766505-11766579,
11767367-11767650,11768466-11768562
Length = 273
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = +1
Query: 340 WKESQCLGYWHRYRA---PLHNG 399
W + C+G WH+YRA LHNG
Sbjct: 110 WHKDDCVGEWHKYRACLEKLHNG 132
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 536 LVKMEI*NKKLTF*SLKCLIQS*LGRSSVNILSCAQVPIRRRCYSCARFSCHIRS-SCLN 712
L K+ + ++ L CLI L + +L+C Q+ C + C + SCLN
Sbjct: 640 LTKLHLCEVRIKDDELTCLISKSLALKQLELLNCRQI-------ICLKIPCLLEQLSCLN 692
Query: 713 VQFCRN 730
V C N
Sbjct: 693 VSLCEN 698
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 111 SHKRFKSCVSRIGSKMKVFTQKRNPLTGCTEWDM 212
S+ RF + + KMKVF N L+G WD+
Sbjct: 466 SNNRFSGPIPTLAGKMKVFRAANNLLSGEIPWDL 499
>01_01_0130 +
1182504-1182817,1183024-1183152,1183582-1183716,
1184296-1184392,1184633-1184736,1184924-1184975,
1185261-1185458
Length = 342
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 332 HNDGKKANVLDIGTGTGLLSIMAAKSG 412
+ D + +VLDIGTG+G LS AK G
Sbjct: 167 NKDLRSCSVLDIGTGSGRLSQQLAKQG 193
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 57 KYMNTIYKVTFFNYL-LASSHKRFKSCVSRIGSKMKVFTQKRNPLTGCTEWDM 212
++ T K +N+ L S+ +F + + KMKVF N L+G WD+
Sbjct: 447 RFSGTFPKQLPWNFTRLDISNNKFSGPIPTLAGKMKVFIAANNLLSGEIPWDL 499
>05_05_0352 +
24328117-24328303,24328451-24328559,24330634-24330692,
24331139-24331220,24331361-24331481,24331751-24332278,
24332724-24332831,24332934-24333131,24334043-24334234,
24336116-24336199,24336385-24336525,24336683-24336748,
24336880-24337047,24337134-24337463,24337568-24337666
Length = 823
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 359 LDIGTGTGLLSIMAAKSGA 415
LD GTGTG+L I A K GA
Sbjct: 666 LDYGTGTGVLGIAALKMGA 684
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,454,026
Number of Sequences: 37544
Number of extensions: 435451
Number of successful extensions: 1075
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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