Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0552
(830 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52) 38 0.013
SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3) 33 0.38
SB_46886| Best HMM Match : Gag_p17 (HMM E-Value=0.24) 31 1.5
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_55800| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_8278| Best HMM Match : MTS (HMM E-Value=4e-07) 30 2.0
SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8) 29 4.6
SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
>SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +2
Query: 287 NQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACE 436
N+KY A AI++M + +LDIGTGTGLL++MAAKSGADT+ ACE
Sbjct: 1 NKKYYSATVDAIKRMKASNRSVKMLDIGTGTGLLAMMAAKSGADTVTACE 50
>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1622
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +2
Query: 263 DMLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSG-ADTIVACEA 439
+ML D R + Y ++AIE+ K VLD+G GTG+LS+ A+ G A + A EA
Sbjct: 128 EMLKDKPRTESY----RMAIEQGAGYFKDKVVLDVGCGTGILSLFCAREGKASKVYAVEA 183
Query: 440 FQPMAECCLRILECNGVADKVTVSQKDLQ 526
+ +A+ I++ N + DK+TV Q ++
Sbjct: 184 SE-IAKLTEEIIKQNNLDDKITVIQGKIE 211
>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +2
Query: 266 MLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVAC 433
ML+D +RN Y KA+ A+ ++G VLDIG+G+G+LS+ A ++GA + AC
Sbjct: 140 MLNDRQRNLAYKKAISNAV----SNGCDI-VLDIGSGSGILSMFAVQAGAKKVYAC 190
>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
Length = 380
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 221 RQRLSPRDRQITFADMLHDTERNQKYSKALKLAIEKMHNDG--KKANVLDIGTGTGLLSI 394
+ + P ++T AD D+ + + L HN + VLD+G GTG+LS+
Sbjct: 141 KDKPKPGASEMTSADYYFDSYAHFDEVRTLTYRNSMYHNKHLFRDKIVLDVGCGTGILSM 200
Query: 395 MAAKSGADTIVA 430
AAK+GA + A
Sbjct: 201 FAAKAGAKHVYA 212
>SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)
Length = 59
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 275 DTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEA 439
D+ R Y +A+ + D + V+D+G G+G+LS A ++GA + A EA
Sbjct: 1 DSIRTSTYQRAMLQNVA----DFQDKVVIDVGAGSGILSFFAIQAGARKVYAIEA 51
>SB_46886| Best HMM Match : Gag_p17 (HMM E-Value=0.24)
Length = 345
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +2
Query: 302 KALKLAIEKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMAECCLRILEC 481
+ L+L I+K GK+ L++ T ++ AAK GA T + + + + R L
Sbjct: 240 RPLRLRIQK-EAAGKR--FLNLFCYTATATVHAAKGGARTTTSVDLSKTYLDWARRNLSL 296
Query: 482 NGVADKVTVSQKDL 523
NG +DK + Q D+
Sbjct: 297 NGYSDKNKLEQADV 310
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +2
Query: 263 DMLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGT-GLLSIMAAKSGADTIVACEA 439
D+ E + K + A+ AI K+ K+ VLD G+G G +AA +G +VA E
Sbjct: 41 DVCKVDEWHYKGTAAVDDAI-KILRINKEHTVLDFGSGLGGPARHLAANTGCH-VVALEL 98
Query: 440 FQPMAECCLRILECNGVADKVTVSQKDL 523
+ M E + + + G++DKV + D+
Sbjct: 99 QEDMHESAIDLTKRCGLSDKVKLQCGDI 126
>SB_55800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 159 KVFTQKRNPLTGCTEWDMQDEDNDYHQE 242
KV PLT C +WD + D HQE
Sbjct: 27 KVLIPLALPLTDCAQWDSMSKTTDSHQE 54
>SB_8278| Best HMM Match : MTS (HMM E-Value=4e-07)
Length = 254
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +2
Query: 278 TERNQKYS--KALKLAIEKMHND-GKKANVLDIGTGTGLLSIMAA 403
TE+ +S + L++ E+M G+ +L+IG GTGL SIMAA
Sbjct: 47 TEQGAAFSTTELLRVLAEEMDKKPGEAFALLEIGCGTGLTSIMAA 91
>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
Length = 382
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 353 NVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMAECCLRI 472
NVLD+ GTG+ SIM ++G + + +A M + LRI
Sbjct: 209 NVLDVSCGTGVDSIMLLENGF-CVTSVDASDKMLKDALRI 247
>SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -2
Query: 478 FQYPETAFSHRLKSLTSNNSVST*FCCHYGEEPCTC---ANIQDIGFLSIIVHFLNSQFQ 308
F P T + + NN S Y ++ C AN ++ ++ VHF F
Sbjct: 25 FAEPYTYYQSNASCIIFNNDSSR--SSRYNDDICCLRPTANHREWRKKTVFVHFQGQDFD 82
Query: 307 SLAIFLVPLSIMQHI 263
+LA+F + ++ H+
Sbjct: 83 ALAVFRTLIRMLTHV 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,061,159
Number of Sequences: 59808
Number of extensions: 501389
Number of successful extensions: 1216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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