Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0549
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   2.3  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.2  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.2  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.2  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -3

Query: 418 LSIAILLTLVIKPIFK-----KIDFINAFLNTPSYNSMYSVFIL 302
           L+++ILL+++   + K     K+ F+  FL+ PS   +YS FI+
Sbjct: 464 LALSILLSIISSFLVKHWRESKVPFLVYFLSAPSLAILYSCFII 507


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 585 GRVFDPVVDSAKHSFC*GSC*QQ 517
           G ++DPVV    H+FC G C  Q
Sbjct: 174 GMLYDPVVSPCGHTFC-GPCLMQ 195


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 394 LVIKPIFKKIDFINAFLNTP 335
           +VI+PIFKKI ++  FL  P
Sbjct: 492 MVIEPIFKKICYLWLFLYCP 511


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = -1

Query: 735 TATVWTLSESAXIDIVDSACIGPLS--TAPV*TLPTTPCIDIVDSVSLIFSVGRVFDPVV 562
           T +  T S +       ++C  P+S  + P  T  +  C       SL    G V  P+V
Sbjct: 754 TTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSISGTCNGATFDASLYVCDGTVLCPIV 813

Query: 561 DSAKHSFC*GSC 526
           +   +  C G+C
Sbjct: 814 NGVSYQNCNGAC 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,470
Number of Sequences: 5004
Number of extensions: 47201
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)