Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0549
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069...    31   0.77 
07_01_0494 + 3720509-3720877                                           29   5.4  
05_03_0483 + 14585581-14587977                                         28   7.2  

>12_02_0142 -
           14306325-14306490,14306584-14306687,14306788-14306967,
           14307155-14307253,14307346-14307535,14307722-14307748,
           14308190-14308506,14308532-14308675,14308799-14308905,
           14309085-14309357,14309470-14309827
          Length = 654

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 219 NFTLFFNTSNMCDILYRNTSSRLYVIL-YNIKTEYIELYDGVLRKALIKSIFLKMGLITN 395
           N + FF  S+   + +     + +V+   N+  E I  +D + R  + +   L   L+TN
Sbjct: 509 NISYFFFASHPIKLFFPIVRDKHWVLTCINLLWEQINYFDSIKRGDISQWFILSQNLVTN 568

Query: 396 VNRIAID 416
             ++A+D
Sbjct: 569 FTKVAVD 575


>07_01_0494 + 3720509-3720877
          Length = 122

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 678 CIGPLSTAPV*TLPTTPCIDIVDSVSLIFSVG 583
           C+ P + A V  LPTT C D   ++S+ +  G
Sbjct: 21  CLAPATAASVRRLPTTSCPDRCGNISIPYPFG 52


>05_03_0483 + 14585581-14587977
          Length = 798

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 587 TEKISETLSTMSIXGVVGNVYTGAVDNGPIQALSTMSIXALSDSVHTVAVNGVHYSRRRN 766
           T    ETL  +   G  G+VY G +DNG   A+   +  +L   VH         S+ R+
Sbjct: 463 TSSFDETL--LLGRGGFGDVYRGEIDNGTTVAIKRSNPLSL-QGVHEFQTEIETLSKVRH 519

Query: 767 GH 772
           GH
Sbjct: 520 GH 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,528
Number of Sequences: 37544
Number of extensions: 264619
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)