Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0549
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6)           28   7.3  

>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 243  SNMCDILYRNTSSRLYVILYNIK-TEYIELYDGVLRKALIKSIFLKMGLITNVNRIAIDN 419
            S++ D+L RN+S R +V   N K T ++ L   ++  + + +  ++   I +   IA+D 
Sbjct: 861  SSIDDLLSRNSSIRYFVFCPNNKYTTWVTLVKSLIDNSTLSTFHIQSPSIDDNCAIALDE 920

Query: 420  V---NTVTVDV 443
            V   NT   D+
Sbjct: 921  VLSGNTTLTDI 931


>SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6)
          Length = 414

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 249 MCDILYRNTSSRLYVILYNIKTEYIELYDGVLRKALIK 362
           +C IL R+ S+    +L N+++E    Y  VLR+ + K
Sbjct: 14  LCHILMRSDSNDTLNVLLNVQSELETYYPSVLRETIRK 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,974
Number of Sequences: 59808
Number of extensions: 346921
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)