Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0549
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine re...    35   0.056
AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical...    33   0.23 
AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    31   0.70 
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    28   8.6  
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein40 protein.
          Length = 331

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
 Frame = -3

Query: 442 TSTVTVLTLSIAILLTLVIKPIFKKIDFINAFLNTPSYNSMYSVFILYNMTYNL------ 281
           T+ + V    I+  L  V+ PIF  + F  +     +Y  +   F L+N+TY++      
Sbjct: 3   TNWIYVFLPRISCALAWVVNPIFIYLIFTESSNKFGNYRFLLLYFALFNLTYSIVNIVVP 62

Query: 280 LDVLRYKISHMLLV 239
           +D++ Y+ S+M+++
Sbjct: 63  IDIITYRYSYMVIL 76


>AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical
           protein Y39B6A.41 protein.
          Length = 511

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 240 TSNMCDILYRNTSSRLYVILYNIKTEYIELYDGV-LRKALIKSIFLKMGLITNVNRIAID 416
           TS + DIL +N + R  + L       + ++ G+ ++   +  I +  GL  + + IAI 
Sbjct: 252 TSGILDIL-QNRNHRFSLFLV-FMCSLVPVFSGLNIKSQYLVDILISYGLTQSNSTIAIM 309

Query: 417 NVNTVTVDVLFFLPILV 467
            +NTV++ V F  P+++
Sbjct: 310 VINTVSLPVSFIAPLII 326


>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 442 TSTVTVLTLSIAILLTLVIKPIFKKIDFINAFLNTPSYNSMYSVFILYNMTYNLLDVL 269
           T+ + V    I+  L  V+ PIF  + F  +     +Y  +   F L+N+TY++++++
Sbjct: 3   TNWIYVFLPRISCALAWVVNPIFIYLIFTESSNKFGNYRFLLLYFALFNLTYSVVNIV 60


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
            F28B4.3 protein.
          Length = 2229

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 545  LCFAESTTGSKTRPTEKISETLSTMSIXGVVGNVYTGAVDNGPIQALSTMSIXALSDSVH 724
            + +  STT   T PT   ++T+      G++   Y GAVD G +Q +S  S  + + +  
Sbjct: 2143 IVYITSTTSFFTDPTPS-AKTIIAQKKYGIITVGYGGAVDTGKLQTISGGSACSFTATDF 2201

Query: 725  TVAVNGV 745
            T   N +
Sbjct: 2202 TTLNNQI 2208


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
            F40F4.6 protein.
          Length = 2214

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 545  LCFAESTTGSKTRPTEKISETLSTMSIXGVVGNVYTGAVDNGPIQALS 688
            L +  +TT   T PT   ++T+      G++   Y GA DN  +Q +S
Sbjct: 2128 LIYLTTTTAFDTDPTPA-AQTILAQKQYGIITIGYGGATDNNKLQTIS 2174


>Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical
           protein F28H7.11 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 403 LLTLVIKPIFKKIDFINAFLNTPSYNSMYSVFILYNMTYNLLD 275
           L + +I P+F  +   + +LN  SY  +   F ++NM+ +L D
Sbjct: 16  LCSFLINPLFIFMIMKDTYLNMGSYKYLLFYFSIFNMSCSLCD 58


>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
 Frame = -3

Query: 433 VTVLTLSIAILLTLVIKPIFKKIDFINAFLN--------TPSYNSMYSVFILYNMTYNLL 278
           V  LT +  I +   + P+ KK+  +N F++          + N++    ++ ++TY+ L
Sbjct: 171 VAKLTANSMIAVMAAVLPMKKKVPLVNMFISWIVCKQPERETINTIIQSLVISDITYDTL 230

Query: 277 DVLRYKISHML 245
             +RY +   L
Sbjct: 231 YAIRYSLKQYL 241


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
 Frame = -3

Query: 619 HCR*RLADLLSWSRFR-SGGRF-CEAQLLLGFVLATTSG*APRAVNLE*PLQVTRIGRKN 446
           HCR  L      +R R +GG+F C  +   G +LA +       +  E   QVT +    
Sbjct: 225 HCRLLLPKSEIKNRLRENGGQFKCGVEDFHG-ILALSK--CQGDIQNEAEGQVTSLNCIR 281

Query: 445 KTSTVTVLTLSIAILLTLVIKPIFKKIDFINAFLNTPSYNSMYSVFILYNMTYNLLDVLR 266
             STV V+    A +L L+       +DF   ++     N+ ++V   + ++  LL  L 
Sbjct: 282 TISTVWVILGHCAAMLILICTNPVDLLDFTKTYMGALLVNAYFAVDTFFFISAFLLSFLW 341

Query: 265 YK 260
           +K
Sbjct: 342 FK 343


>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
           protein C09H5.2b protein.
          Length = 1039

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 10  LGIFVSV*GVHYFVLEYITNG-FRSKTL*NSNQKFK 114
           + IF+SV GV  ++L Y  NG + S+   +SN  FK
Sbjct: 888 MSIFISVGGVVAYLLSYYLNGIYPSELAFSSNDHFK 923


>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
           protein C09H5.2a protein.
          Length = 1054

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 10  LGIFVSV*GVHYFVLEYITNG-FRSKTL*NSNQKFK 114
           + IF+SV GV  ++L Y  NG + S+   +SN  FK
Sbjct: 888 MSIFISVGGVVAYLLSYYLNGIYPSELAFSSNDHFK 923


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,975
Number of Sequences: 27780
Number of extensions: 261363
Number of successful extensions: 702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)