Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0548
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 98 6e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 93 2e-19
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 80 1e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.36
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.9
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.9
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 29 4.4
SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014) 28 5.8
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 5.8
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 5.8
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 97.9 bits (233), Expect = 6e-21
Identities = 43/73 (58%), Positives = 56/73 (76%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 437
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 438 TREHALLAFTLGV 476
TREHA+L +LGV
Sbjct: 61 TREHAILVRSLGV 73
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 93.1 bits (221), Expect = 2e-19
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 435 QTREHALLAFTLGVKTAHRRS*TK*FH*TTIQ--*AQI*GIKKEVXSYIKKIGYNP 596
QTREHA+LA T GVK H T++ + IK ++ ++KK+G+NP
Sbjct: 269 QTREHAMLAKTAGVK--HLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24 TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 187 MGKGSFKYAWVLDKLKAERE 246
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 4 RYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
R + ++R P ++ T I + V+G+V+SGKST G L Y
Sbjct: 94 RKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 439 PVSMPCSLSPSVSKQLIVGVKQNDSTEPPYSEPRFEESRRK 561
P S+P +LSP S Q + +Q T PP PR SRR+
Sbjct: 449 PSSLPPTLSPLASTQPVSTPRQQRRT-PPSFTPRSSISRRR 488
>SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)
Length = 478
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 424 LRTVKPVSMPCSLSPSVSKQLIVGVKQNDSTEPPYSEPRFEESRR 558
+ T+KP++ PC L P K L +K+ PY E R +++
Sbjct: 45 ISTLKPLT-PCRLVPQFVKYLWCFIKEGPPGYAPYCEERLRRTQQ 88
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 395
T I + + + +D PGH F G D +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVA 392
+D PGH + M+ G + D A+L++A
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,246,846
Number of Sequences: 59808
Number of extensions: 407595
Number of successful extensions: 1081
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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