Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0548
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   211   4e-57
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   211   4e-57
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   208   5e-56
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   204   6e-55
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.002
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.9  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  211 bits (516), Expect = 4e-57
 Identities = 108/134 (80%), Positives = 110/134 (82%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
           TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG
Sbjct: 15  TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 74

Query: 435 QTREHALLAFTLGVKTAHRRS*TK*FH*TTIQ*AQI*GIKKEVXSYIKKIGYNPAAVAFV 614
           QTREHALLAFTLGVK                   +   IKKEV SYIKKIGYNPAAVAFV
Sbjct: 75  QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFV 134

Query: 615 PISGWHGDXMLELS 656
           PISGWHGD MLE+S
Sbjct: 135 PISGWHGDNMLEVS 148



 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +1

Query: 478 KQLIVGVKQNDSTEPPYSEPRFEESRRK 561
           KQLIVGV + DSTEPPYSE RFEE +++
Sbjct: 89  KQLIVGVNKMDSTEPPYSETRFEEIKKE 116



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 214 WVLDKLKAERE 246
           WVLDKLKAERE
Sbjct: 1   WVLDKLKAERE 11


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  211 bits (516), Expect = 4e-57
 Identities = 108/134 (80%), Positives = 110/134 (82%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
           TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG
Sbjct: 72  TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 131

Query: 435 QTREHALLAFTLGVKTAHRRS*TK*FH*TTIQ*AQI*GIKKEVXSYIKKIGYNPAAVAFV 614
           QTREHALLAFTLGVK                   +   IKKEV SYIKKIGYNPAAVAFV
Sbjct: 132 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFV 191

Query: 615 PISGWHGDXMLELS 656
           PISGWHGD MLE+S
Sbjct: 192 PISGWHGDNMLEVS 205



 Score =  145 bits (352), Expect = 3e-37
 Identities = 67/68 (98%), Positives = 67/68 (98%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68



 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +1

Query: 478 KQLIVGVKQNDSTEPPYSEPRFEESRRK 561
           KQLIVGV + DSTEPPYSE RFEE +++
Sbjct: 146 KQLIVGVNKMDSTEPPYSETRFEEIKKE 173


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  208 bits (507), Expect = 5e-56
 Identities = 106/132 (80%), Positives = 108/132 (81%)
 Frame = +3

Query: 261 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 440
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 441 REHALLAFTLGVKTAHRRS*TK*FH*TTIQ*AQI*GIKKEVXSYIKKIGYNPAAVAFVPI 620
           REHALLAFTLGVK                   +   IKKEV SYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 621 SGWHGDXMLELS 656
           SGWHGD MLE+S
Sbjct: 121 SGWHGDNMLEVS 132



 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +1

Query: 478 KQLIVGVKQNDSTEPPYSEPRFEESRRK 561
           KQLIVGV + DSTEPPYSE RFEE +++
Sbjct: 73  KQLIVGVNKMDSTEPPYSETRFEEIKKE 100


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  204 bits (498), Expect = 6e-55
 Identities = 105/134 (78%), Positives = 108/134 (80%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
           TIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGISKNG
Sbjct: 72  TIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNG 131

Query: 435 QTREHALLAFTLGVKTAHRRS*TK*FH*TTIQ*AQI*GIKKEVXSYIKKIGYNPAAVAFV 614
           QTREHALLAFTLGVK                  A+   IKKEV SYIKKIGYN A+VAFV
Sbjct: 132 QTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFV 191

Query: 615 PISGWHGDXMLELS 656
           PISGWHGD MLE S
Sbjct: 192 PISGWHGDNMLEPS 205



 Score =  145 bits (352), Expect = 3e-37
 Identities = 67/68 (98%), Positives = 67/68 (98%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERE 246
           DKLKAERE
Sbjct: 61  DKLKAERE 68


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 55  KTHINIVVIGHVDSGKST 108
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 64  INIVVIGHVDSGKST 108
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 56  FSLPIFG*SRITNCV*Y 6
           FSLPIFG   I +C+ Y
Sbjct: 57  FSLPIFGTRWIFSCIGY 73


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 386
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -2

Query: 503 CLTPTMSCFDTEGESEQGMLTG--LTVLRDTSFEF-TGTGSYDEHSAISLR 360
           CL P   C    G  E+G  TG  +TV  D +     G G  D   AI ++
Sbjct: 439 CLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANIEIGAGEEDGVLAIHVK 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,058
Number of Sequences: 438
Number of extensions: 3679
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)