Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0546
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    28   1.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.2  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   3.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   4.3  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   5.6  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   5.6  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   5.6  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   7.5  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.9  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   9.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.9  

>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +1

Query: 364 FKRRKLADAVVVHKETNEKSSLSSRLKEMLQKA--VNREPLKTSLDDKKVEVQII 522
           FKR+K+ +++ +HK+ + +++    +K ++      +R  +KT+L +K V   +I
Sbjct: 103 FKRKKVDNSLFLHKKISSQNAQVRLIKRIVMSLSYKDRARIKTALKEKPVTPSLI 157


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 182 SHFAKEPKQKAKSRRRLKKHKENSITCSQGPSI 280
           S   K+P    K+RRR +K ++ SI+ S G  +
Sbjct: 8   SDLPKKPANVKKNRRRFQKSQKKSISPSSGSEL 40


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 394 VVHKETNEKSSLSSRLKEMLQKAVNREPLKTSLDDKKVEVQI 519
           VV   +NEK SLS RL +   +   R    T  D + ++ Q+
Sbjct: 431 VVTSPSNEKPSLSQRLGDSQFRLTKRNTFATESDHQALQEQL 472


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 376 KLADAVVVHKETNEKSSLSSRLKEMLQKAVNREPLKTSLDDKK 504
           KLA+ +V+ K+T++K  +S  LK+ L +A     +  ++ D K
Sbjct: 718 KLAEVLVLRKDTSKK-LISLSLKKSLVEAAKENRMPINITDLK 759


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 SASETEENYCTPQSHFAKEPKQKAKSRRRLKKHKEN 250
           ++SE +E         A E KQ+ K  R+LKK K++
Sbjct: 466 NSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDD 501


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 546 SPISPSTEGHVSCFEHRRPRSYKKPSAHF 632
           SP  P T    S F ++  +SY  P +H+
Sbjct: 271 SPPIPPTPSQFSAFMYQNQQSYLSPQSHY 299


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/62 (20%), Positives = 31/62 (50%)
 Frame = +2

Query: 221 RRRLKKHKENSITCSQGPSITKNVTFQKRKKAQKLF*NPATNQTMNTNLKEESWLMLWLC 400
           +RR  ++  N IT      ++++   +K+ K +K   +  +++      +++SW  L  C
Sbjct: 271 KRRRSRNAANRITDYVDSDLSESSMKEKQSKIEKYMKSDKSSKNFKPPFQKKSWEDLVDC 330

Query: 401 IK 406
           +K
Sbjct: 331 VK 332


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 200 PKQKAKSRRRLKKHKENSITCSQGPSITKNVTFQKRKKAQKLF*NPATNQTMNTNLKEES 379
           P       RRL+  + ++   S   SI  +++FQ  KKA+    N + N T  TN+   S
Sbjct: 247 PTLSTPYNRRLRHKRHSTTPISLSNSIAPSLSFQP-KKARYESANVSFNDTSFTNVPTSS 305


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 379 LADAVVVHKETNEKSSLSSRLKEMLQKAVNREPLKTSLD 495
           ++ A+ + K T++  SLS+      QK  +R+P K+  D
Sbjct: 243 VSKAIQLVKSTSDLGSLSTNTSSTAQKNKSRKPTKSFSD 281


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 334 SSDESDDEYKFKRRKLADAVVVHKETNEKSSLSSRLKEMLQK 459
           ++DE    Y    RKL  A ++ K T    SL S+ K+++++
Sbjct: 464 TADELKGTYVPLSRKLNKATILSKATEYIKSLQSKNKKLIEE 505


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 182 SHFAKEPKQKAKSRRRLKKHK 244
           SHF KE K K  S +  KK+K
Sbjct: 184 SHFKKEKKSKHSSGKSSKKYK 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,802
Number of Sequences: 5004
Number of extensions: 44936
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)