Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0546
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont... 33 0.17
At5g03890.1 68418.m00365 hypothetical protein 30 1.6
At2g22795.1 68415.m02704 expressed protein 29 2.8
At3g22421.1 68416.m02831 F-box family protein contains Pfam PF00... 29 3.7
At2g18500.1 68415.m02156 ovate family protein 69% similar to ova... 29 3.7
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 3.7
At5g60810.1 68418.m07629 hypothetical protein 28 4.9
At5g16060.1 68418.m01877 expressed protein 28 4.9
At3g53150.1 68416.m05857 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.5
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 8.5
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 27 8.5
At1g02060.1 68414.m00126 pentatricopeptide (PPR) repeat-containi... 27 8.5
>At1g68780.1 68414.m07862 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 432
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 242 KENSITCSQGPSITKNVTFQKRKKAQKLF*NPATNQTMNTNLKEESWLMLWLCIKR-QTK 418
K+NS+ CS+ P I + K K+ LF T ++ +E WL L ++R + +
Sbjct: 96 KDNSLACSESPVIRPQLFELKHLKSLSLFNCFTTPNRYLASISDEKWLDLSKSLERLEIR 155
Query: 419 SLP*VLG 439
S P ++G
Sbjct: 156 SNPGLIG 162
>At5g03890.1 68418.m00365 hypothetical protein
Length = 179
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 391 VVVHKETNEKSSLSSRLKEMLQKAVNREPLKTSLDDKKVE 510
+VVHK+ EK + EM+ + + ++ L TS DD +E
Sbjct: 119 IVVHKQELEKLLQGGSVHEMMYQTLEKQLLLTSSDDDDLE 158
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 328 LESSDESDDEYKFKRRKLADAVVVHKET----NEKSSLSSRLKEMLQKAVNREPLKTSLD 495
LE + E +DE K K + KET NE+SS K+ + + +E + +
Sbjct: 498 LEETKEKEDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEASSQEE 557
Query: 496 DKKVEVQ 516
K+ E +
Sbjct: 558 SKENETE 564
>At3g22421.1 68416.m02831 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 426
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 173 TPQSHFAKEPKQKAKSRRRLKKHKENSITCSQGPSITKNVTFQKRKKAQK 322
T SH E + SR LK + +TC S+ KN +F K + A K
Sbjct: 3 TTISHLPTELLDEIISRVPLKSTRAVRLTCKNWDSLFKNRSFMKEEAAAK 52
>At2g18500.1 68415.m02156 ovate family protein 69% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 315
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 140 ISASETEENYCTPQSHFAKEPKQKAKSRRRLKKHKENS 253
+ A TEE Y TP+ +K RR KK K NS
Sbjct: 104 VIAQVTEEEYETPRRKIYNGGSEKDNRRRLKKKEKSNS 141
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 191 AKEPKQKAKSRRRLKKHKENSITCSQGPSITKNVTFQKR 307
A+E +QK K R+ KK + +T Q KN F+KR
Sbjct: 264 AEEIRQKRKIRKMEKKQEGLILTAKQKRDAAKNEAFRKR 302
>At5g60810.1 68418.m07629 hypothetical protein
Length = 83
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 367 KRRKLADAVVVHKETNEKSSLSSRLKEMLQKAVNREPL 480
+ RK V V E NEK+ L KEM++K N++ L
Sbjct: 25 ENRKTLKHVNVKVEANEKNGLEIESKEMVKKRKNKKRL 62
>At5g16060.1 68418.m01877 expressed protein
Length = 95
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 152 ETEENYCTPQSHFAKEPKQKAKSRRRLKKHKENSITCSQGPSITKNVTFQKRKKAQKLF* 331
+ EN+ + A K KAK+ ++ C+ G T +V + RK+A++L
Sbjct: 7 QARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGR--TFSVVWTCRKQAREL-- 62
Query: 332 NPATNQTMNTNLKEE 376
N +Q N N+ EE
Sbjct: 63 NTCLHQFTNDNVLEE 77
>At3g53150.1 68416.m05857 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 507
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +1
Query: 340 DESDDEYKF--KRRKLAD-AVVVHKETNEKSSLSSRLKEMLQKAVNR 471
DE+DD+ +F +RR++ + AV+ K EK S S + ++Q + +
Sbjct: 457 DENDDDNEFVRRRRRIQELAVMAKKAVEEKGSSSINVSILIQDVLEQ 503
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 176 PQSHFAKEPKQKAKSRRRLKKHKENS 253
P+ +EP+ +++ LKKHKENS
Sbjct: 481 PKQDSKREPEDDLETKPILKKHKENS 506
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 328 LESSDESDDEYKFKRRKLADAVVVHKETNEKSSLSSRLKEMLQKAVNREPLKTSLDDKKV 507
L+ S+ E K+ ++ DA+ K E+ L +L A E L T+ D+K+
Sbjct: 409 LKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPTANFDQKI 468
Query: 508 EVQIIK 525
VQII+
Sbjct: 469 GVQIIQ 474
>At1g02060.1 68414.m00126 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 710
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 403 KETNEKSSLSSRLKEMLQKAVNREPLKTSLD 495
K TNE+ S S+L L +AVN P L+
Sbjct: 24 KVTNEERSTKSKLARSLARAVNSNPWSDELE 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,429,629
Number of Sequences: 28952
Number of extensions: 221825
Number of successful extensions: 742
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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