Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0545
         (591 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.48 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   1.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   1.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.8  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 5   YSGVLKWTVGGHSGYYALEAALDRAIKEGYDITNPEYYSK 124
           YSG  K     H   Y +   +   IK  Y++TN ++Y +
Sbjct: 428 YSGPYKIIAKPHPNTYQIADPVTNEIKGVYNMTNLKFYHR 467


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 445 QYPQTHPTIYHQRNSTDQPPKSVLFC 368
           Q+ +++  + H+R  TD+ P S   C
Sbjct: 88  QFTKSYNLLIHERTHTDERPYSCDIC 113


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 424 TIYHQRNSTDQPPKS 380
           TIYHQ N  +  PKS
Sbjct: 222 TIYHQENFENYEPKS 236


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 481 QVLVYFGALIYSDELMEKIEKTIYYC 558
           Q+ V FG++ ++D ++  +    YYC
Sbjct: 275 QMYVDFGSVGWNDWIVAPLGYDAYYC 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,102
Number of Sequences: 336
Number of extensions: 2952
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)