Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0545
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...   104   8e-24
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    31   0.17 
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.5  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   6.2  

>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score =  104 bits (250), Expect = 8e-24
 Identities = 46/94 (48%), Positives = 69/94 (73%)
 Frame = +1

Query: 262 LKEANKSALKLLEIIVNNFPSFRDEAVYKGQKLGIYKRAQILVADLWNFFGGKSWGEFED 441
           LK+ +  A +L+++++ +FP FRD +VYKG++  + KRAQILVA+ W  F G+++G F+D
Sbjct: 177 LKKCHNQAQRLIKLLLADFPDFRDVSVYKGRECYMLKRAQILVAETWACFQGQNYGRFDD 236

Query: 442 IDKITMFADYRVPQVLVYFGALIYSDELMEKIEK 543
           ID ITMFADYRVPQ+L   G L YS +  +++ K
Sbjct: 237 IDSITMFADYRVPQILWQLGCLSYSSDFKKRLLK 270



 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
 Frame = +2

Query: 38  HSGYYALEAALDRAIKEGYDITNPEYYS---KITTEQLEMIMRGDNEAKIPLFTERMSVL 208
           ++GY++L AA+++A+  G  IT+P +Y+   +     +  +       KIPL  ER+ ++
Sbjct: 99  YTGYWSLCAAINKALDAGIPITSPAFYADEKQCPDTLIASVFDSATVEKIPLLEERIRIM 158

Query: 209 HETGAILLEKYNGTFRLV*KKLTSQ 283
             +G +L++ Y+G++  + KK  +Q
Sbjct: 159 RASGRVLVDSYHGSYCGLLKKCHNQ 183


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = +2

Query: 5    YSGVLKWTVGGHSGYYALEAALDRAIKEGYDITNPEYYSKITT--EQLEMIMRGDNEAKI 178
            +SG+  WT G    + A E ++ R++++  D     Y  K++T  +Q  +I+  +NE  +
Sbjct: 1225 FSGMPNWTYGADKLHVAAEISVMRSLRDKLDSFLLRYPLKVSTTLKQKLLIILLNNEMYM 1284

Query: 179  PLFTERMSVLHETGAILLE 235
             L+T    VLH     ++E
Sbjct: 1285 -LYTWLTPVLHGRNVRMVE 1302


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -1

Query: 420 FTTKEIPQISHQNLCSFVNT*FLPFVDSLVSERREVVHNNLK*FQG*LVSFFQTSLKVPL 241
           F  + + ++   +L S++N   L F DSL+  R   +H   + +   L   F + +   +
Sbjct: 233 FLLRPLREVLSSDLKSYMNIKGLAFCDSLIEARPNTIHGVTESYFSSLNDTFPSLVSTVV 292

Query: 240 YFSSKI 223
             SSK+
Sbjct: 293 KMSSKL 298


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 400 WNFFGGKSWGEFEDID 447
           WNF G +S+  F D+D
Sbjct: 290 WNFIGVESFNSFRDVD 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,854
Number of Sequences: 5004
Number of extensions: 48784
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)