Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0545
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)                  29   3.8  
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)                    27   8.7  
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             27   8.7  
SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_14236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 256 TCLKEANKSALKLLEIIVNNFPSFRDEAVYKGQKLGIYKRAQILVA 393
           +CLK A K+ +  L+I      + RDEA  KG  LGIY+   +L A
Sbjct: 6   SCLKAAIKADISRLQIQAEM--NNRDEARNKGVPLGIYRTNLLLEA 49


>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
          Length = 507

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 187 KQWYFSFIIPSHYHF*LFCSYLRIVFWVCYIITFLNCSIKGSLQSI 50
           K W  S II  +  F + CS  R  F   Y+I  L C + G+ + +
Sbjct: 149 KTWILSAIISGNLFFLILCSVYR--FLPSYVIVVLLCFVTGASEGM 192


>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 532 FPLTRHYKSMLQNTLKPGALYSQRT**SCQYPQTHPTIYHQRNSTDQP 389
           +P T    +M  NT +P A+Y   T     YP T P++    N+T QP
Sbjct: 352 YPNTTPSFAMNPNTTQPLAMYPNTTQPLAMYPNTTPSLAMNPNTT-QP 398


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/58 (20%), Positives = 31/58 (53%)
 Frame = -3

Query: 196 SFRKQWYFSFIIPSHYHF*LFCSYLRIVFWVCYIITFLNCSIKGSLQSIIPRMSTNSP 23
           S+ ++++F  +  ++ H   FC ++R   W+  +++ ++   KG+    +  M T+ P
Sbjct: 421 SYLERYFFLILFNAYLHEQTFCRWMRHRPWIYRMLSHIDIKEKGATSEFM--MRTHQP 476


>SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)
          Length = 279

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 337 AVYKGQKLGIYKRAQILVADLWNFFGGKSWGEFEDIDKIT 456
           A+Y     G+   A +++  L NF   K W  F+ I+K T
Sbjct: 225 ALYSNHHYGVDALAGLMLVFLVNFMMRKVWSPFKTIEKST 264


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 104 NPEYYSKITTEQLEMIMRGDNE 169
           +P ++ KIT E  EM+MRG  E
Sbjct: 316 SPWFHGKITAEYAEMLMRGAGE 337


>SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 337 AVYKGQKLGIYKRAQILVADLWNFFGGKSWGEFEDIDKIT 456
           A+Y     G+   A +++  L NF   K W  F+ I+K T
Sbjct: 269 ALYSNHHYGVDALAGLMLVFLVNFMMRKVWSPFKTIEKST 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,719,454
Number of Sequences: 59808
Number of extensions: 343025
Number of successful extensions: 760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)