BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0545 (591 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 29 1.8 At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 29 1.8 At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote... 29 3.1 At2g40980.1 68415.m05062 expressed protein 28 4.1 At1g36990.1 68414.m04611 expressed protein contains PS00070: Ald... 28 5.4 At1g61960.1 68414.m06989 mitochondrial transcription termination... 27 7.1 >At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2) (GLUR2) identical to putative glutamate receptor like-protein GLUR2 [Arabidopsis thaliana] gi|13160471|gb|AAK13248; plant glutamate receptor family, PMID:11379626 Length = 912 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 301 IIVNNFPSFRDEAVYKGQKLGIYKRAQILVADLW 402 IIVN FP + + QKLG+ ++ + +A W Sbjct: 226 IIVNTFPKTGKKIFEEAQKLGMMEKGYVWIATTW 259 >At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2) (GLUR2) identical to putative glutamate receptor like-protein GLUR2 [Arabidopsis thaliana] gi|13160471|gb|AAK13248; plant glutamate receptor family, PMID:11379626 Length = 912 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 301 IIVNNFPSFRDEAVYKGQKLGIYKRAQILVADLW 402 IIVN FP + + QKLG+ ++ + +A W Sbjct: 226 IIVNTFPKTGKKIFEEAQKLGMMEKGYVWIATTW 259 >At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein kinase, putative similar to many predicted protein kinases Length = 1120 Score = 28.7 bits (61), Expect = 3.1 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +1 Query: 271 ANKSALKLLEIIVNNFPSFRDEAVYKGQKL 360 AN S L L + NNF F E V KG+KL Sbjct: 459 ANSSHLTTLILDTNNFTGFFPETVCKGRKL 488 >At2g40980.1 68415.m05062 expressed protein Length = 617 Score = 28.3 bits (60), Expect = 4.1 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = +1 Query: 340 VYKGQKLGIYKRAQILVAD---LWNFFGGKSWGEFEDIDKITMFADYRVPQVLVYFGALI 510 VY+ I K ++I V+ +WN G +WG+ + +FA Y ++ YFGA Sbjct: 186 VYECAADWIKKHSKIAVSPVDRIWNKLGNANWGDIGALQ--VVFATYH--SIMQYFGAPR 241 Query: 511 YSDE 522 +S E Sbjct: 242 HSIE 245 >At1g36990.1 68414.m04611 expressed protein contains PS00070: Aldehyde dehydrogenases cysteine active site; similar to high molecular mass nuclear antigen (GI:2754696) [Gallus gallus];similar to streptococcal hemagglutinin (GI:8885520) [Streptococcus gordonii] similar to proteophosphoglycan (GI:5420389) [Leishmania major] Length = 581 Score = 27.9 bits (59), Expect = 5.4 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +2 Query: 89 GYDITNPEYYSKITTEQLEMIMRGDNEAKIPLFTERMSVLHE 214 G+ N E Y +T E+++ + E + PLF ER+S++HE Sbjct: 537 GWVENNGEEY--LTEEEIDSFLEQYKELR-PLFPERLSMIHE 575 >At1g61960.1 68414.m06989 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 457 Score = 27.5 bits (58), Expect = 7.1 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 352 QKLGIYKRAQILVADLWNFFGGKSWGEF 435 +K+ +YKR VAD+W F K W F Sbjct: 260 EKVNVYKRLGFGVADVWAIF--KKWPSF 285 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,671,254 Number of Sequences: 28952 Number of extensions: 247456 Number of successful extensions: 631 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 631 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1171109464 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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