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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0545
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3...    29   1.8  
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3...    29   1.8  
At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote...    29   3.1  
At2g40980.1 68415.m05062 expressed protein                             28   4.1  
At1g36990.1 68414.m04611 expressed protein contains PS00070: Ald...    28   5.4  
At1g61960.1 68414.m06989 mitochondrial transcription termination...    27   7.1  

>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 IIVNNFPSFRDEAVYKGQKLGIYKRAQILVADLW 402
           IIVN FP    +   + QKLG+ ++  + +A  W
Sbjct: 226 IIVNTFPKTGKKIFEEAQKLGMMEKGYVWIATTW 259


>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 IIVNNFPSFRDEAVYKGQKLGIYKRAQILVADLW 402
           IIVN FP    +   + QKLG+ ++  + +A  W
Sbjct: 226 IIVNTFPKTGKKIFEEAQKLGMMEKGYVWIATTW 259


>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
           kinase, putative similar to many predicted protein
           kinases
          Length = 1120

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 271 ANKSALKLLEIIVNNFPSFRDEAVYKGQKL 360
           AN S L  L +  NNF  F  E V KG+KL
Sbjct: 459 ANSSHLTTLILDTNNFTGFFPETVCKGRKL 488


>At2g40980.1 68415.m05062 expressed protein 
          Length = 617

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 340 VYKGQKLGIYKRAQILVAD---LWNFFGGKSWGEFEDIDKITMFADYRVPQVLVYFGALI 510
           VY+     I K ++I V+    +WN  G  +WG+   +    +FA Y    ++ YFGA  
Sbjct: 186 VYECAADWIKKHSKIAVSPVDRIWNKLGNANWGDIGALQ--VVFATYH--SIMQYFGAPR 241

Query: 511 YSDE 522
           +S E
Sbjct: 242 HSIE 245


>At1g36990.1 68414.m04611 expressed protein contains PS00070:
           Aldehyde dehydrogenases cysteine active site; similar to
           high molecular mass nuclear antigen (GI:2754696) [Gallus
           gallus];similar to streptococcal hemagglutinin
           (GI:8885520) [Streptococcus gordonii] similar to
           proteophosphoglycan (GI:5420389) [Leishmania major]
          Length = 581

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 89  GYDITNPEYYSKITTEQLEMIMRGDNEAKIPLFTERMSVLHE 214
           G+   N E Y  +T E+++  +    E + PLF ER+S++HE
Sbjct: 537 GWVENNGEEY--LTEEEIDSFLEQYKELR-PLFPERLSMIHE 575


>At1g61960.1 68414.m06989 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 457

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 352 QKLGIYKRAQILVADLWNFFGGKSWGEF 435
           +K+ +YKR    VAD+W  F  K W  F
Sbjct: 260 EKVNVYKRLGFGVADVWAIF--KKWPSF 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,671,254
Number of Sequences: 28952
Number of extensions: 247456
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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