Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0541
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    81   2e-16
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   4.4  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   4.4  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.8  

>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
 Frame = +1

Query: 271 TKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVNNNLYLL 450
           T   +FEQGPRT+RP GV GL  L++I  LG+ + +  I  + P+A+NR IY  + L  +
Sbjct: 53  TGTVLFEQGPRTLRPAGVAGLANLDLISKLGIEDKLLRISSNSPSAKNRYIYYPDRLNEI 112

Query: 451 PSSLKGVFQK-NEPFSKPL-ISHFITI*RSLTKQLKDDSIYNFVKGDSGRKLL-ICISPM 621
           PSS+ G  +   +P  +P+ ++  +   R   +   D+S+ +F++   G+ +    +S M
Sbjct: 113 PSSILGSIKSIMQPALRPMPLAMMLEPFRKSKRDSTDESVGSFMRRRFGKNVTDRVMSAM 172

Query: 622 IVGICAGDAKEISVKXLM 675
           I GI AGD  ++S+   M
Sbjct: 173 INGIYAGDLNDLSMHSSM 190


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 398 WSGFIGDICSLRPKSCIIFSVLSPVTPLGRIVL 300
           +SG I  +C L PK   +  +L P+TP+G +V+
Sbjct: 78  FSGTIYGLCLL-PKGHSLRRILGPLTPIGGLVM 109


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 585 ISFHEVINRIIFQLFGEASLNR 520
           I FH  INR+ + L   A+LNR
Sbjct: 315 IDFHSSINRLRYDLAASATLNR 336


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 625 QSWVKCISAISFPNLLSRSYKSNHLSTVW 539
           + W     A  FP L   +YK N  STVW
Sbjct: 378 RKWEFYSYAKEFPELFPDAYKLNEKSTVW 406


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 396 VRFYR*YMLAKAQILYHIQCIKPGNSFGPYSSWALLKNVILCP 268
           ++FY   ++A    LYH+QC+ P  SF  ++S    K ++  P
Sbjct: 180 IQFYT-TLIAIIGELYHLQCLSPLTSF--FTSCVTPKTILESP 219


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 424 YVNNNLYLLPSSLKGVFQKNEPFSK 498
           Y+NNN YL PS +      N P+ K
Sbjct: 469 YINNNSYLPPSYMDFYTWYNSPYPK 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,308
Number of Sequences: 5004
Number of extensions: 49141
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)