Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0541
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 31   0.65 
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)                     28   6.0  
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)                    28   8.0  
SB_33677| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 444  IQIIVYVYHSVPSGRVVRFYR*YML 370
            +Q++VY++ S+P+G +  FYR Y L
Sbjct: 1101 LQVVVYIFESLPTGGMSGFYRLYSL 1125


>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
          Length = 534

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 262 SIRTKDYVFEQGPRTIRPKGV-TGLNTLNMIQDLGLSEHISPIKPDHPAAR 411
           SI TK  +F    + I   G  T  NT+  I++ GL +H+    P+ P AR
Sbjct: 228 SITTKIRLFNTTVKPILLYGAETWRNTVTTIRNPGLHQHLPEEDPEDPLAR 278


>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
          Length = 567

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 380 DICSLRPKSCIIFSVLSPVTPLGRIVLGP 294
           +I  L PKSC     L P TP G  V+ P
Sbjct: 450 EISVLYPKSCHHIKQLRPATPSGHYVIDP 478


>SB_33677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 85  NIILQFLTRVK*EDNGRYTWRWAGWSLYRL 174
           N+I Q   R+  E N RY WRW G+ LY L
Sbjct: 273 NLIAQRYGRIL-ERNTRYCWRWTGF-LYGL 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,684
Number of Sequences: 59808
Number of extensions: 338318
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)