Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0541
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14205.1 68414.m01681 ribosomal protein L18 family protein si...    31   0.53 
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    29   3.7  

>At1g14205.1 68414.m01681 ribosomal protein L18 family protein
           similar to SP|P09415 50S ribosomal protein L18 {Bacillus
           stearothermophilus}
          Length = 233

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 606 YQQFPSRISFHEVINRIIFQLFGEASLNRDKVRNQRLRK 490
           Y QFP RI+   V+   + +  G   +   K RN+R RK
Sbjct: 25  YPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRK 63


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 391 PDHPAARNRMIYVNNNLYLLPSSLK 465
           PD+P +R   + ++ NLY+  SSLK
Sbjct: 686 PDNPTSRQTSMRLDGNLYIFDSSLK 710


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,166
Number of Sequences: 28952
Number of extensions: 244082
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)