Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0539
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 113 2e-26
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 52 1e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 49 7e-07
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 47 2e-06
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 46 4e-06
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 45 9e-06
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 44 2e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 42 6e-05
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 1.1
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 2.4
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 4.3
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.6
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 7.5
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 9.9
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.9
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 9.9
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 113 bits (272), Expect = 2e-26
Identities = 56/125 (44%), Positives = 81/125 (64%)
Frame = +2
Query: 254 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 433
Q+PTAS IA+ LL+GELLKQA+++I EGLHP +I++GF++A+N+
Sbjct: 68 QNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNE 127
Query: 434 SLEVLESMKIPIEIARENLVDVARTHSKLRSTQAWADVLTDACVDAVLTIRTPGKPVDLH 613
+L L+S K E+ RE L++VA+T + + + L A VDA+LTIR P +P+DLH
Sbjct: 128 ALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLH 187
Query: 614 MGEIM 628
M EIM
Sbjct: 188 MVEIM 192
Score = 98.3 bits (234), Expect = 9e-22
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +3
Query: 57 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 236
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 237 LHEMQI 254
L EMQI
Sbjct: 62 LTEMQI 67
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 51.6 bits (118), Expect = 1e-07
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +3
Query: 114 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIS 257
NI AAK + DV++T LGP+ +KML+ G + +T DG+ +L E++++
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVA 71
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 257 HPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKS 436
HP A + ++L GE+L A + +HP ++ F A +
Sbjct: 72 HPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDA 131
Query: 437 LEVLESMKIPIEI-ARENLVDVARTHSKLRSTQAWADVLTDACVDAVLTI 583
L +++ + +P+ + + + RT + W+D++ + AV T+
Sbjct: 132 LSIIDEITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTV 181
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 48.8 bits (111), Expect = 7e-07
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3
Query: 114 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 254
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + +
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/51 (37%), Positives = 36/51 (70%)
Frame = +3
Query: 102 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 254
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M++
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEV 85
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Frame = +2
Query: 347 ELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI-----PIEIARENLVDVARTH 511
ELL+QA+I ++ +HP++I +G+ IA +++ L + I P + R +L ++ART
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKF-RSDLENIARTT 162
Query: 512 SKLRSTQAWADVLTDACVDAVLTIRTPGKPVDLHMGEIMGDETQDGY 652
+ + VDAVL ++ ++ + +I+G + D +
Sbjct: 163 LSSKILSQNKNHFAQLAVDAVLRLKGSTNLDNIQIIKILGGKLDDSF 209
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 90 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQI 254
R A + A + D++K+ LGPKG K+L S + GDI +T DG +L + +
Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL 72
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 45.2 bits (102), Expect = 9e-06
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Frame = +2
Query: 257 HPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKS 436
HP A L+ V+ GELL +A+ I GL P I +G+++A + +
Sbjct: 79 HPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHT 138
Query: 437 LEVLESM---KIPIEIARENLVDVARTHSKLRSTQAWADVLTDACVDAVLTI--RTPGK- 598
+EVLE + KI + + L+ RT + D L+D A+LT+ + P K
Sbjct: 139 MEVLEEICADKIETVESEKELIKAIRTCISSKQ-YGNEDFLSDLVAKAILTVLPKDPSKF 197
Query: 599 PVD-LHMGEIMG 631
VD + + +IMG
Sbjct: 198 NVDNIRVVKIMG 209
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/114 (20%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 254 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 433
+HP ++ V++ ELL++A+ + +HP I G+ +A +
Sbjct: 73 EHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIRE 132
Query: 434 SLEVL-ESMKIPIE-IARENLVDVARTHSKLRSTQAWADVLTDACVDAVLTIRT 589
+++ + + + ++ + +E+L++VA+T + +D + VDA+L+++T
Sbjct: 133 AVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKT 186
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 114 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 254
N+ A I +V+K++LGP G KMLV GD+ +T DG +L + +
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDV 72
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 105 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 254
L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDI 75
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 368 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 463
+F+ E + I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 389 HPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTHSKLRSTQAW 538
HP +E F+ N E +E++KIP I ++ + S+ +AW
Sbjct: 321 HPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAW 370
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 147 MKTNLGPKGTMKMLVSGAGDIKITKDG 227
+ LGPKG ++ G KITKDG
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDG 84
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 401 ITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTHSKLRSTQAWAD 544
+ EG D + K +EV + K N +DV + S Q W D
Sbjct: 328 VPEGIDTDQFKPIEVNKKPKKEKRARSSNYIDVPASKKVATSLQRWND 375
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 218 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 123
G + S RN+ FHR F+ ++++ + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +2
Query: 428 NKSLEVLESMKIPIEIARENLVDVART 508
++SL++L+ + ++ ++ VD+ART
Sbjct: 270 SESLDLLDDFNYQVTVSNKSFVDIART 296
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 167 RTKVSFHYILNSFSCGYIYSKCLCS 93
RT +S+H LN+ Y +C+CS
Sbjct: 211 RTDLSYHKKLNTLFTAYWDLQCMCS 235
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +3
Query: 9 SS*LIETENVLNEMAAISL-----LNPKAEFARAAQALAVNI 119
SS IE E+V+ AA+SL LNPK A + Q ++I
Sbjct: 447 SSSFIEEEHVIWYFAAVSLSLLQLLNPKTRLAGSLQLFCLSI 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,787
Number of Sequences: 5004
Number of extensions: 47217
Number of successful extensions: 139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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