Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0539
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 9e-34
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 50 2e-06
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 49 4e-06
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 45 6e-05
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 45 6e-05
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 38 0.010
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 34 0.091
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05) 33 0.21
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_1846| Best HMM Match : RnaseH (HMM E-Value=0.00033) 28 6.0
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 140 bits (339), Expect = 9e-34
Identities = 66/125 (52%), Positives = 90/125 (72%)
Frame = +2
Query: 254 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 433
QHPTASLIAR V++IGELLKQAD+++SEGLHPR++TEGF++A+ K
Sbjct: 172 QHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKK 231
Query: 434 SLEVLESMKIPIEIARENLVDVARTHSKLRSTQAWADVLTDACVDAVLTIRTPGKPVDLH 613
+LEVLE +K+ E+ R+ L++VA+T + + AD+LT+ VDAVLTIR P KP+DLH
Sbjct: 232 ALEVLEEVKVSREMDRDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPKKPIDLH 291
Query: 614 MGEIM 628
M E+M
Sbjct: 292 MVEVM 296
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = +3
Query: 48 MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAG 203
MAAI LNPKAE AR+A AL++NI+AA+G+QDV+KTNLGPKGTMK+L G
Sbjct: 1 MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +3
Query: 114 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 227
NI+AAK + D ++T+LGPKG KM+ G GD+ IT DG
Sbjct: 29 NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3
Query: 114 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 254
+I AA+ + ++KT+LGPKG KM+VS G++ +T DG +L M++
Sbjct: 35 HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEV 81
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 57 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GDIKITKDGN 230
+S+LN AE RA A + A I D++K+ LGPKG K+L S G+I++T DG
Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65
Query: 231 VLLHEMQI 254
+L + I
Sbjct: 66 TILKSIGI 73
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +2
Query: 335 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEIARENLVDVA 502
+L ELLK+A+ +S +HP+ I G+ + + + LE+ + E RE+L+++A
Sbjct: 101 VLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFREDLMNIA 160
Query: 503 RTHSKLRSTQAWADVLTDACVDAVLTIRTPG 595
RT + D VDAVL ++ G
Sbjct: 161 RTTLSSKILVQHRDHFAKLAVDAVLRLKGSG 191
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +3
Query: 57 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 236
I LL + ++ L NI A + I D ++T LGP+G K++V G G I+ DG +
Sbjct: 641 IILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700
Query: 237 LHEMQI 254
++ + I
Sbjct: 701 INLLDI 706
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +2
Query: 335 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEIARENLVDVA 502
+L ELLK+A+ +S +HP+ I G+ + + + LE+ + E R++L+++A
Sbjct: 19 VLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIA 78
Query: 503 RTHSKLRSTQAWADVLTDACVDAVLTIRTPG 595
RT + D VDAVL ++ G
Sbjct: 79 RTTLSSKILVQHRDHFAKLAVDAVLRLKGSG 109
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 34.3 bits (75), Expect = 0.091
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 69 NPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 227
N E A+A A + + D + LGPKG ++ G KITKDG
Sbjct: 57 NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDG 109
>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
Length = 651
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 63 LLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLH 242
+LN A+F + + + S +G V + LG T + +GAG + + K G V+L
Sbjct: 64 VLNSHAQFCPSLKEMRGESSMIRGYSPVTQAFLGTLFTWAVTAAGAGLVFVFKSGQVMLA 123
Query: 243 EMQISTLQP 269
S L P
Sbjct: 124 ASYWSLLNP 132
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 232 FCYMRCKSAPYSLTDCSSVNRSR*CHWRWYNIYC 333
FC + C S T C+ +R CH WY YC
Sbjct: 706 FCDVNCNSNSSHFT-CNKTTGARVCHSNWYGTYC 738
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 232 FCYMRCKSAPYSLTDCSSVNRSR*CHWRWYNIYC 333
+C + C S S C+ +R CH WY C
Sbjct: 737 YCDVYCNSNSSSHFACNKTTGARVCHRDWYGSLC 770
>SB_1846| Best HMM Match : RnaseH (HMM E-Value=0.00033)
Length = 255
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -1
Query: 623 FHPCADQQVCLEFEW*VPHQ 564
FH CA QV LE EW VP Q
Sbjct: 209 FHFCASHQVSLEVEW-VPRQ 227
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 254 DLHLM*QNIAILGDLYVPSTRNQHFHRAF 168
DL + + LGD+Y+P RN H R F
Sbjct: 31 DLKQVFKKYGDLGDIYIPRDRNTHESRGF 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,139,499
Number of Sequences: 59808
Number of extensions: 362050
Number of successful extensions: 939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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