Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0539
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.1  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   8.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 413 FDIARNKSLEVLESMKIPIEIARE 484
           F  AR ++  V E  ++PIEI R+
Sbjct: 161 FSRAREEANVVPEGARVPIEIPRD 184


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 464 PIEIARENLVDVARTHSKLRSTQAWADVLTDACVDAV 574
           P E+   NL    R H    +T A   + T+  VDA+
Sbjct: 430 PRELEAVNLGSACRIHGSPATTAAPPQLPTEESVDAL 466


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 575 LTIRTPGKPVDLHMGEIMGDETQDGY 652
           L IR PG+P   H G   G E ++G+
Sbjct: 78  LNIR-PGQPSRQHAGFEFGKEYKNGF 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,369
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)