Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0538
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 112 2e-25
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 112 2e-25
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 112 2e-25
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ... 32 0.21
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ... 29 1.5
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)... 29 2.0
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)... 29 2.0
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00... 29 2.6
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,... 29 2.6
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 3.4
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 112 bits (269), Expect = 2e-25
Identities = 46/78 (58%), Positives = 68/78 (87%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E++ ++TI++NPR +
Sbjct: 61 AAEIDNLMTIVANPRQFK 78
Score = 111 bits (268), Expect = 2e-25
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 77 FKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 112 bits (269), Expect = 2e-25
Identities = 46/78 (58%), Positives = 68/78 (87%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E++ ++TI++NPR +
Sbjct: 61 AAEIDNLMTIVANPRQFK 78
Score = 111 bits (268), Expect = 2e-25
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 77 FKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 112 bits (269), Expect = 2e-25
Identities = 46/78 (58%), Positives = 68/78 (87%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E++ ++TI++NPR +
Sbjct: 61 AAEIDNLMTIVANPRQFK 78
Score = 111 bits (268), Expect = 2e-25
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 77 FKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
(CS13) ribosomal protein S13 precursor, chloroplast
Arabidopsis thaliana, PIR:S59594; identical to cDNA
ribosomal protein S13 GI:1515106
Length = 169
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 357 LERLKKIRAHRGMRHYWGLRVRGQ 428
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 402
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 264 VSYMPRIRHDSDN-FFNLFFCAFASTLVKINVGFFENNVGVPPANT 130
++Y+ ++ + FFNLFF A +KI +G F ++ +PP+++
Sbjct: 20 IAYLHPVKQSAMTIFFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64
>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 352
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -3
Query: 309 IYHQQYPFAYLGTSLVSYMP-RIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPAN 133
I H Q ++ SY+P R +D N++N L KIN E+N GV +N
Sbjct: 78 IVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHL---KKKLKKINESGEEDNDGVSSSN 134
Query: 132 TFDSRHRKHNLAFAIDVRIHDTKNMLK 52
T ++ + + R+ NM K
Sbjct: 135 TSSQKNHQSTNKGQWERRLQTDINMAK 161
>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 351
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -3
Query: 309 IYHQQYPFAYLGTSLVSYMP-RIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPAN 133
I H Q ++ SY+P R +D N++N L KIN E+N GV +N
Sbjct: 77 IVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHL---KKKLKKINESGEEDNDGVSSSN 133
Query: 132 TFDSRHRKHNLAFAIDVRIHDTKNMLK 52
T ++ + + R+ NM K
Sbjct: 134 TSSQKNHQSTNKGQWERRLQTDINMAK 160
>At5g49610.1 68418.m06139 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(gb|AAF30317.1)
Length = 359
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 400 ITGAF-VCVVSTLRLLAGEEELLVYQRRSKLNK 495
+ G F +C LA +++LVYQRRSKL K
Sbjct: 299 VPGIFPICQTGEYVFLATHKQVLVYQRRSKLWK 331
>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
putative similar to putative 30S ribosomal protein S13,
chloroplast precursor GB:P42732 [Arabidopsis thaliana]
Length = 154
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 333 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
L ++ +++RL ++ +RG RH GL RGQ
Sbjct: 98 LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 303 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 398
G YS + NLD+ L+R+KK+ A G R
Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,576
Number of Sequences: 28952
Number of extensions: 221025
Number of successful extensions: 627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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