Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0537
         (296 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0YJE7 Cluster: ATP synthase subunit C; n=1; Lyngbya sp...    31   3.9  
UniRef50_A6DB52 Cluster: HYDROGENASE-4 COMPONENT C; n=3; Epsilon...    31   5.1  
UniRef50_A7RH71 Cluster: Predicted protein; n=1; Nematostella ve...    31   6.7  

>UniRef50_A0YJE7 Cluster: ATP synthase subunit C; n=1; Lyngbya sp.
           PCC 8106|Rep: ATP synthase subunit C - Lyngbya sp. PCC
           8106
          Length = 71

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 214 EITILSKCNFDSYYSTAYYPKINVG 140
           E++IL KC+F S YST Y  +I +G
Sbjct: 43  EVSILDKCDFSSSYSTDYQAQICLG 67


>UniRef50_A6DB52 Cluster: HYDROGENASE-4 COMPONENT C; n=3;
           Epsilonproteobacteria|Rep: HYDROGENASE-4 COMPONENT C -
           Caminibacter mediatlanticus TB-2
          Length = 308

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 131 KYLPYINFGIVGSRIIAVKIAFAQD 205
           KY PYI FG+V + + A+ I +A D
Sbjct: 68  KYAPYIMFGVVATMLAALPITYATD 92


>UniRef50_A7RH71 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 832

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 72  DKCIYNIVTXSNMFGXFNI*NTYPTLI 152
           DKCI NI     +FG   I N YPTL+
Sbjct: 703 DKCIANIQRGLKVFGLCTIINIYPTLL 729


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,145,163
Number of Sequences: 1657284
Number of extensions: 3422350
Number of successful extensions: 5707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5707
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 10380836353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)