Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0537
         (296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   5.5  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    23   7.3  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    23   9.6  

>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 291 EKKWSQLFLLLHXIFNYXXILFL 223
           + KWS  F L   ++NY  + F+
Sbjct: 132 KNKWSLTFKLTQNLYNYRILYFI 154


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 110 VWGI*YLKYLPYI 148
           VW I YL+ LPYI
Sbjct: 184 VWSIFYLEILPYI 196


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 196 KCNFDSYYSTAYY 158
           KC F+ YYS++ Y
Sbjct: 42  KCTFNKYYSSSQY 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,054,889
Number of Sequences: 5004
Number of extensions: 16359
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)