Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0537
         (296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52003-1|AAG00054.1|  503|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    25   7.4  
AC027664-1|AAK18923.1|  326|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U52003-1|AAG00054.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK381.2 protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 211 ITILSKCNFDSYYSTAYYPKINV 143
           + I+ KC FDS+Y   +  KI V
Sbjct: 428 LPIVFKCYFDSFYKDTFVTKIGV 450


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 232 LVFVYKEITILSKCNFDSYYS 170
           +VF++K ITILS   F +YYS
Sbjct: 223 VVFIFKSITILSVI-FHAYYS 242


>AC027664-1|AAK18923.1|  326|Caenorhabditis elegans Hypothetical
           protein EGAP798.1 protein.
          Length = 326

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 234 ILFLFTKKLPS*ANAILTAIIRLPTIPKL 148
           +LF++  +LP+ A  +  +IIRLP + ++
Sbjct: 78  LLFIWADRLPTPATHLQQSIIRLPLLGQI 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,714,310
Number of Sequences: 27780
Number of extensions: 89321
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)