Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0537
         (296 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   2.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   2.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    19   9.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 211 ITILSKCNFDSYYS 170
           +T+ +KC + SYYS
Sbjct: 629 VTLSTKCPYPSYYS 642


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 205 ILSKCNFDSYYSTAYYPKINV 143
           + S   FD +Y+TA + + NV
Sbjct: 113 LYSAKTFDVFYNTAVWARFNV 133


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 205 ILSKCNFDSYYSTAYYPKINV 143
           + S   FD +Y+TA + + NV
Sbjct: 113 LYSAKTFDVFYNTAVWARFNV 133


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 208 TILSKCNFDSYYSTAYYPKINV 143
           TI +  N+ +Y    YY  IN+
Sbjct: 322 TIHNNNNYKNYNKKLYYNIINI 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,572
Number of Sequences: 438
Number of extensions: 1273
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)