Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0533
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    54   2e-08
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    28   1.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.8  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   8.3  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.3  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +3

Query: 63  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 239
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 240 GVTIAAR 260
           G+ +A +
Sbjct: 61  GIILAGQ 67



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 301 ELGKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCGY 438
           +L K G+ C+ T+  +++  Y E   P +AA + E L +YL+  GY
Sbjct: 82  KLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 289 YHPRELGKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLG 414
           +HP + G  G+ C+K   A +   YE+PI  + +  +    G
Sbjct: 188 FHPEKSGSAGLRCLK---AFLTGNYEQPISGEASKLIENSFG 226


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 292 DMVCATEVDVPRAAIVTPPLVSSDSFSKP--ATIFATSSFEISKPSDFAHTLPS*PAM 125
           D +     ++   AIVT   ++S S S P  + +F      I KP    HTL   P +
Sbjct: 535 DCISGNTENIYERAIVTLSRIASQSTSDPPPSFVFRDDQLVIDKPGFVYHTLNDIPQL 592


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -3

Query: 592 HTDYAAIIYR---IIKTNERSSYHFIEYTKCVT 503
           +TD   +IYR   IIKTN+  + H ++Y   V+
Sbjct: 23  NTDSEDLIYRPKKIIKTNQEDAVHDLKYENFVS 55


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 145 MCGQSRKASKFQKMKWRR 198
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,859
Number of Sequences: 5004
Number of extensions: 61138
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)