Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0533
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 53 2e-07
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 53 2e-07
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 52 5e-07
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 43 3e-04
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 30 1.6
09_03_0175 - 13110771-13112240 28 8.7
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 28 8.7
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 8.7
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 63 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 230
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 231 TSGGV 245
G+
Sbjct: 61 APTGL 65
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 307 GKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCG 435
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 63 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 230
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 231 TSGGV 245
G+
Sbjct: 61 APTGL 65
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 307 GKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCG 435
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 52.0 bits (119), Expect = 5e-07
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +3
Query: 63 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 230
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 231 TSGGVTIAARGTSTSVAQ 284
G+ + GT V Q
Sbjct: 61 APTGLFLG--GTKYMVIQ 76
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 307 GKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCG 435
G G+ KT ++++ +Y+EP+ P Q +VE+LG+YLI G
Sbjct: 88 GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +3
Query: 156 KSEGFEISKDEVAKIVAGFENESLLTSGGVTIAARGTSTSVAQTISSARTWQGRR 320
K+ GF+I DE+ IV G +++ L+T GGVT A +TS A +S+A RR
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVTGIADKLATSPADGLSTAEESIKRR 146
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 513 NALLISPWKKYYLIVLLDHGELRPLITTGN*IF 415
NA+ + +KKY L+ L+ +G++ PL+ G IF
Sbjct: 548 NAIAVEAYKKYILVSLIQNGQI-PLLDKGESIF 579
>09_03_0175 - 13110771-13112240
Length = 489
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -3
Query: 340 AVSSCNARRPCQVRADDMVCATEVDVPRAAIVTPPLVSSDSFSKPATIFATSSFEIS 170
A S +A R +RA A V RAA+ + S+ S+S PA+ +TSS+ S
Sbjct: 61 APPSADAAREAVLRAMPADAAKSVRTRRAALASS---SNSSYSSPASAASTSSYTSS 114
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -3
Query: 349 PQLAVSSCNARRPCQVRADDMVCATEVDVPRAAIVTPPLVSSDSFSKPATIFATSSFEIS 170
P+++ + R + R D + +T D A ++TP +VSSDS S+ + + S
Sbjct: 301 PRMSCAKIAGRDKLKRRGDWLSSSTGPD--DANLLTPKIVSSDSASEKCGGDCSENSANS 358
Query: 169 KPSDFAHTLPS*PAMAAFVT 110
P D + P P++ T
Sbjct: 359 PPLDLPLSFPLLPSLFPLAT 378
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 241 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 116
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,712,889
Number of Sequences: 37544
Number of extensions: 408424
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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