Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0533
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protei... 54 1e-07
AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3 pr... 54 1e-07
AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1 pr... 39 0.003
AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical... 39 0.003
U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protei... 37 0.013
AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2 pr... 37 0.013
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 30 1.9
>U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protein 3
protein.
Length = 126
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +3
Query: 63 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFEN-ESLLTSG 239
MSW D ++ L+ S V+KAAI G DG VWAKS+ F IS +E F + ++LL +G
Sbjct: 1 MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 307 GKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCGY 438
G G KT QAV+I +YE+ +QP+ + L +Y + Y
Sbjct: 83 GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126
>AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3
protein.
Length = 126
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +3
Query: 63 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFEN-ESLLTSG 239
MSW D ++ L+ S V+KAAI G DG VWAKS+ F IS +E F + ++LL +G
Sbjct: 1 MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 307 GKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCGY 438
G G KT QAV+I +YE+ +QP+ + L +Y + Y
Sbjct: 83 GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126
>AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1
protein.
Length = 132
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 69 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 236
W Y+D A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + +
Sbjct: 4 WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63
Query: 237 GGVTI 251
G I
Sbjct: 64 KGADI 68
>AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical
protein Y18D10A.20 protein.
Length = 132
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 69 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 236
W Y+D A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + +
Sbjct: 4 WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63
Query: 237 GGVTI 251
G I
Sbjct: 64 KGADI 68
>U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protein 2
protein.
Length = 131
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 69 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 239
W DY+ S + +AAI G DG+VWA+S F ++ E+ + A F + + +
Sbjct: 4 WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63
Query: 240 GVTI 251
G +
Sbjct: 64 GADL 67
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 310 KVGVHCMKTQQAVVIXLYE-EPIQPQQAASVVEKLGEYLITCGY 438
+ G KT QA+VI +YE + Q + VE + +YL + GY
Sbjct: 88 QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131
>AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2
protein.
Length = 131
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 69 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 239
W DY+ S + +AAI G DG+VWA+S F ++ E+ + A F + + +
Sbjct: 4 WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63
Query: 240 GVTI 251
G +
Sbjct: 64 GADL 67
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 310 KVGVHCMKTQQAVVIXLYE-EPIQPQQAASVVEKLGEYLITCGY 438
+ G KT QA+VI +YE + Q + VE + +YL + GY
Sbjct: 88 QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -3
Query: 625 HKIITCAH*THHTDYAAIIYRIIKTNERSSYHFIEYTKCVTYFPVEKI 482
H + T AH H + + ++ + TN+R + HF +++ CVT+ + K+
Sbjct: 164 HGMFT-AHDYGHVECVSRVFPM-PTNQRQAKHFTDWSTCVTFEDMSKV 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,905
Number of Sequences: 27780
Number of extensions: 352029
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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