Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0533
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          111   6e-27
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  111 bits (267), Expect = 6e-27
 Identities = 49/64 (76%), Positives = 58/64 (90%)
 Frame = +3

Query: 63  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 242
           MS QDYVDKQL+ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE + +LTS G
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSG 60

Query: 243 VTIA 254
           VT+A
Sbjct: 61  VTLA 64



 Score = 88.6 bits (210), Expect = 5e-20
 Identities = 38/46 (82%), Positives = 44/46 (95%)
 Frame = +1

Query: 301 ELGKVGVHCMKTQQAVVIXLYEEPIQPQQAASVVEKLGEYLITCGY 438
           +LGKVGVHCMKT QAVV+ LYE+PIQPQQAASVVEKLG+YL++CGY
Sbjct: 81  KLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126



 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 251 SGTRYIYLSGTDHIIRANLAR 313
           +G RYIYLSGTD +IRA L +
Sbjct: 64  AGNRYIYLSGTDRVIRAKLGK 84


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 304  VRADDMVCATEVDVPRAAIVTPPLVSS 224
            V++  + C TE D P A I    LV S
Sbjct: 1166 VKSAPIHCQTEQDAPEAPIAIKALVMS 1192


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 162 PTL-PTHCHHDRQWQLL*HI 106
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 75  DYVDKQLMASRCVTKAAIAGHDGN 146
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 662 EETVSV*KGVQNPQNNHMC 606
           EET+ +  G +  Q  H+C
Sbjct: 375 EETIDINNGAELMQETHVC 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,811
Number of Sequences: 438
Number of extensions: 4509
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)