Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0531
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 33 0.050
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 30 0.47
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 30 0.61
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490... 29 0.81
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 1.1
03_05_0796 + 27787401-27788831 28 2.5
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 27 3.3
02_05_0270 + 27335318-27335543,27336878-27337277,27337336-27337357 27 3.3
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 27 4.3
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 27 5.7
04_03_0689 + 18746735-18748296,18748401-18748485 27 5.7
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 27 5.7
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 26 7.6
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 26 7.6
02_01_0683 - 5067432-5067944 26 7.6
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 33.5 bits (73), Expect = 0.050
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 274 HLRIHTNERPFKCSG--CXEGFYTVN 345
H+R+HT ERP+KCS C + F V+
Sbjct: 867 HIRVHTGERPYKCSAPDCGQSFRYVS 892
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 265 LRAHLRIHTNERPFKC--SGCXEGF 333
L+ H +H +ERPFKC GC F
Sbjct: 834 LKRHQCVHRDERPFKCPWDGCPMTF 858
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 30.3 bits (65), Expect = 0.47
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 95 PLVPEVSIGESSTEQHNTSQSTNDEXNAQLQNHLRHHRAERRFVCAFCNKAFSRQ 259
P+VP V G + Q+ + E A L A RFVC CNK F R+
Sbjct: 9 PVVPTVLRGHCDPASTPSQQNPDAEVIALSPRTLM---ATNRFVCEVCNKGFQRE 60
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 29.9 bits (64), Expect = 0.61
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 274 HLRIHTNERPFKC--SGCXEGFYTVN 345
HLR+HT +RP+ C GC + F V+
Sbjct: 1159 HLRVHTGDRPYVCHEPGCAQTFRFVS 1184
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +1
Query: 250 FPSNNLRAHLRIHTNERPFKC--SGCXEGF 333
F L H ++HT++RP C GC F
Sbjct: 1121 FSHKYLLQHRKVHTDDRPLTCPWKGCNMAF 1150
>02_05_0488 +
29448430-29448526,29448649-29448756,29448855-29449000,
29449109-29449319,29449752-29449989,29450098-29450248,
29450353-29450682
Length = 426
Score = 29.5 bits (63), Expect = 0.81
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = -2
Query: 254 GKTLYYRRHRRIVSRHDGDVSGSATVHSSHH--------LWTVMYCVVLYCFLQW 114
G +LY RHRR++ SG HSSH+ L V+ C + YC W
Sbjct: 11 GSSLYRFRHRRLMDTTPATDSGG---HSSHNGMPIMVSILVVVIICTLFYCVYCW 62
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 274 HLRIHTNERPFKCS--GCXEGFYTVN 345
H+R+HT RP++C GC + F V+
Sbjct: 1303 HMRVHTGVRPYECQEPGCGQTFRFVS 1328
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +1
Query: 265 LRAHLRIHTNERPFKCS--GCXEGF 333
L H ++H +ERP KC+ GC + F
Sbjct: 1270 LLQHRKVHIDERPLKCTWKGCKKAF 1294
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 206 RAERRFVCAFCNKAF-SRQII*GRIFVSTQMRGRSNVADAXKAFT 337
RA +RFVC+ C + F S Q + G + + + +A A + T
Sbjct: 242 RASKRFVCSICGRCFGSHQALGGHVLGHKKKAKNAAIAAAARDAT 286
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSRQ 259
A RFVC CNK F R+
Sbjct: 39 ATNRFVCEVCNKGFQRE 55
>02_05_0270 + 27335318-27335543,27336878-27337277,27337336-27337357
Length = 215
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSRQ 259
A RFVC CNK F R+
Sbjct: 91 ATNRFVCEVCNKGFQRE 107
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSR 256
A RFVC CNK F R
Sbjct: 44 ATNRFVCEICNKGFQR 59
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSR 256
A RFVC CNK F R
Sbjct: 35 ATNRFVCEVCNKGFQR 50
>04_03_0689 + 18746735-18748296,18748401-18748485
Length = 548
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 95 PLVPEVSIGESSTEQHNTSQSTNDEXNAQLQNHLRHHRAERRFVCAF 235
PL E+S ++TE+H ++ ++ +A ++ + HR R F F
Sbjct: 433 PLQKEMSAFLANTEKHKDIEACDEVISASIKK-IHEHRRRRAFFLGF 478
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +1
Query: 265 LRAHLRIHTNERPFKC--SGCXEGF 333
LR H IH ++ P+KC GC F
Sbjct: 580 LRRHQSIHNDDMPYKCPWEGCSMAF 604
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 320 HPLHLNGLSFVWIRRCALKLFDGKTLYYRRHRRIVSRHDGDVSGSATVHSSHHL 159
+P HL + V I + K F L ++ I+ DG +G V+ + HL
Sbjct: 350 NPSHLEAVDPVVIGKTRAKQFYSNDLDRTKNMGILIHGDGSFAGQGVVYETLHL 403
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 122 ESSTEQHNTSQSTNDEXNAQLQNHLRHHRAERR 220
+ S E+H+ Q +E Q QN + ERR
Sbjct: 763 QMSQEKHHWQQKHREEQQQQFQNQSKEQEQERR 795
>02_01_0683 - 5067432-5067944
Length = 170
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 158 TNDEXNAQLQNHLRHHRAERRFV 226
T DE NAQ NH R +RR V
Sbjct: 58 TEDEANAQPMNHGNDERKKRRLV 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,868,017
Number of Sequences: 37544
Number of extensions: 164957
Number of successful extensions: 551
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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