Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0531
(357 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 29 0.69
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 29 0.91
At4g22217.1 68417.m03213 hypothetical protein 27 2.8
At3g53640.1 68416.m05925 protein kinase family protein contains ... 27 2.8
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 27 3.7
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 27 3.7
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 27 3.7
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 27 3.7
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 27 3.7
At2g16050.1 68415.m01840 DC1 domain-containing protein contains ... 27 3.7
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 27 3.7
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 27 4.9
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 27 4.9
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 27 4.9
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ... 27 4.9
At1g74325.1 68414.m08607 expressed protein ; expression supporte... 26 6.4
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 26 6.4
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 26 6.4
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 26 6.4
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 26 8.5
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 26 8.5
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 274 HLRIHTNERPFKC--SGCXEGFYTVN 345
HLR+HT ERP+ C GC F V+
Sbjct: 1288 HLRLHTGERPYICKVDGCGLSFRFVS 1313
Score = 29.1 bits (62), Expect = 0.91
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +1
Query: 274 HLRIHTNERPFKCS--GCXEGF 333
H R+H +ERPF+CS GC F
Sbjct: 1258 HQRVHKDERPFECSWKGCSMTF 1279
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 107 EVSIGESSTEQHNTSQSTNDEXNAQ-LQNHLRHHRAERRFVCAFCNKAFSR 256
++ + +S T++ +Q N + ++ + + A RFVC CNK F R
Sbjct: 60 QLVVPDSQTQKKRRNQPGNPDPESEVIALSPKTLMATNRFVCEICNKGFQR 110
>At4g22217.1 68417.m03213 hypothetical protein
Length = 87
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 147 VLCCSVLLSPMDTSGTKG*HLKHA*TPSLPXSNNCLKIKS 28
V+C SVLLSP + G+ L A TP +C+K K+
Sbjct: 15 VVCLSVLLSPTEVDGSCDFPL-GACTPFRDCKESCIKFKT 53
>At3g53640.1 68416.m05925 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 642
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 116 IGESSTEQHNTSQSTNDEXNAQLQNHLRHHRAER 217
I ESS +H S S +DE + H HH R
Sbjct: 6 IVESSHRKHRRSYSPSDEVVKSSKRHKHHHHKHR 39
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSR 256
A RFVC CNK F R
Sbjct: 57 ATNRFVCEICNKGFQR 72
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSR 256
A RFVC CNK F R
Sbjct: 78 ATNRFVCEICNKGFQR 93
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSR 256
A RFVC CNK F R
Sbjct: 78 ATNRFVCEICNKGFQR 93
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSR 256
A RFVC CNK F R
Sbjct: 59 ATNRFVCEICNKGFQR 74
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 250 FPSNNLRAHLRIHTNERPFKC--SGCXEGF 333
F L H R+H+++RP KC GC F
Sbjct: 1272 FSHKYLVQHQRVHSDDRPLKCPWKGCKMTF 1301
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 274 HLRIHTNERPFKCS--GCXEGFYTVN 345
H+R+HT RP+ C+ C + F V+
Sbjct: 1310 HIRVHTGARPYVCAEPDCGQTFRFVS 1335
>At2g16050.1 68415.m01840 DC1 domain-containing protein contains
Pfam domain PF03107: DC1 domain
Length = 167
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 274 HLRIHTNERPFKCSGCXE 327
+L+ E+PFKC GC E
Sbjct: 15 NLKFDYTEKPFKCDGCNE 32
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSRQ 259
A RF+C CNK F R+
Sbjct: 77 ATNRFICEVCNKGFQRE 93
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSRQ 259
A RF+C CNK F R+
Sbjct: 79 ATNRFICDVCNKGFQRE 95
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 182 LQNHLRHHRAERRFVCAFCNKAFS 253
LQ H + + F C C KAF+
Sbjct: 249 LQTHYKRKHGSKPFACRMCGKAFA 272
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 212 ERRFVCAFCNKAF 250
ER+FVC FC+K F
Sbjct: 6 ERKFVCKFCSKRF 18
>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 361
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 211 RETIRLCLL**SVFPSNN-LRAHLRIHTNERPFKCSG 318
+E LC FPS L H+RIHTNE +G
Sbjct: 5 KENSFLCKYCYKTFPSGKALGGHIRIHTNENSVGYNG 41
>At1g74325.1 68414.m08607 expressed protein ; expression supported
by MPSS
Length = 179
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 165 SFVDCDVLCCSVLLSPMDTSGTKG*HLKHA*TPSLPXSNNCLKIKSIKTFSF 10
SF C +LC L +P+D + H+KHA +P S L++ +F++
Sbjct: 19 SFSVCRMLC-GKLQNPLDHKKDEASHVKHASQGDVPFSGP-LQVSKSNSFAW 68
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 116 IGESSTEQHNTSQSTNDEXN--AQLQNHLRHHRAERRFVC 229
+ E S+ H T Q E A L+ H++ H ER F C
Sbjct: 58 VDEESSSNH-TCQECGAEFKKPAHLKQHMQSHSLERSFTC 96
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSR 256
A RF+C CNK F R
Sbjct: 88 ATNRFICEVCNKGFQR 103
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSRQ 259
A RF+C CNK F R+
Sbjct: 78 ATNRFLCEVCNKGFQRE 94
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 209 AERRFVCAFCNKAFSRQ 259
A RF C CNK F R+
Sbjct: 2 ATNRFFCEICNKGFQRE 18
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 182 LQNHLRHHRAERRFVCAFCNKAFS 253
LQ H + R F C C KAF+
Sbjct: 327 LQTHYKRKHGVRPFACRRCGKAFA 350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,427,417
Number of Sequences: 28952
Number of extensions: 139138
Number of successful extensions: 432
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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